Daily Papers

Large language models (LLMs) have gained extended context windows through scaling positional encodings and lightweight continual pre-training. However, this often leads to degraded performance on short-text tasks, while the reasons for this degradation remain insufficiently explored. In this work, we identify two primary factors contributing to this issue: distribution drift in hidden states and attention scores, and catastrophic forgetting during continual pre-training. To address these challenges, we propose Long Context Pre-training with Restoration Distillation (LongReD), a novel approach designed to mitigate short-text performance degradation through minimizing the distribution discrepancy between the extended and original models. Besides training on long texts, LongReD distills the hidden state of selected layers from the original model on short texts. Additionally, LongReD also introduces a short-to-long distillation, aligning the output distribution on short texts with that on long texts by leveraging skipped positional indices. Experiments on common text benchmarks demonstrate that LongReD effectively preserves the model's short-text performance while maintaining comparable or even better capacity to handle long texts than baselines. Our code is available at https://github.com/RUCAIBox/LongReD.

Effectively handling instructions with extremely long context remains a challenge for Large Language Models (LLMs), typically necessitating high-quality long data and substantial computational resources. This paper introduces Step-Skipping Alignment (SkipAlign), a new technique designed to enhance the long-context capabilities of LLMs in the phase of alignment without the need for additional efforts beyond training with original data length. SkipAlign is developed on the premise that long-range dependencies are fundamental to enhancing an LLM's capacity of long context. Departing from merely expanding the length of input samples, SkipAlign synthesizes long-range dependencies from the aspect of positions indices. This is achieved by the strategic insertion of skipped positions within instruction-following samples, which utilizes the semantic structure of the data to effectively expand the context. Through extensive experiments on base models with a variety of context window sizes, SkipAlign demonstrates its effectiveness across a spectrum of long-context tasks. Particularly noteworthy is that with a careful selection of the base model and alignment datasets, SkipAlign with only 6B parameters achieves it's best performance and comparable with strong baselines like GPT-3.5-Turbo-16K on LongBench.

Complete orthogonal predictive coordinates do not by themselves bind a latent direction to a named intervention. We present a mathematical and synthetic audit motivated by vascular device-vessel suitcordance. Capacity-matched least-squares predictors were exactly equivalent under complete fixed output transforms, whereas an anchor-only observer recovered interpretations only within the span of known perturbation signatures. Six three-dimensional configurations across 64 seeds gave a maximum paired prediction discrepancy of 6.7e-15 but a median untransported edit error of 1.513. Coordinate transport removed that error. Noisy and weak anchors constrained calibration stability, and changing the representation basis required recalibration or verified transport. Across 256 additional fits in dimensions 3-24, prediction equivalence persisted within 4.0e-15. We then evaluated nine deliberate runnable fault classes across 64 seeds. All 576 faulty executions completed, but each violated at least one reconstruction, prediction, delivered-edit or scope contract; all 320 valid control records passed. Repeating a faulty implementation gave exact self-agreement despite error against the separately computed simulator expectation. For one omitted-direction defect, probe coverage followed its analytic law, and rank-aware abstention protected unsupported interpretations. Scalar-noise experiments exposed both missed weak faults and excessive rejection under narrow relative tolerances. These controls provide an executable separation of prediction, semantic support and scientific acceptance. They are synthetic numerical audits, not clinical validation, neural JEPA-Anything replication, agent learning or patient treatment-effect estimation.

Position bias has proven to be a prevalent issue of modern language models (LMs), where the models prioritize content based on its position within the given context. This bias often leads to unexpected model failures and hurts performance, robustness, and reliability across various applications. Our mechanistic analysis attributes the position bias to two components employed in nearly all state-of-the-art LMs: causal attention and relative positional encodings. Specifically, we find that causal attention generally causes models to favor distant content, while relative positional encodings like RoPE prefer nearby ones based on the analysis of retrieval-augmented question answering (QA). Further, our empirical study on object detection reveals that position bias is also present in vision-language models (VLMs). Based on the above analyses, we propose to ELIMINATE position bias caused by different input segment orders (e.g., options in LM-as-a-judge, retrieved documents in QA) in a TRAINING-FREE ZERO-SHOT manner. Our method changes the causal attention to bidirectional attention between segments and utilizes model attention values to decide the relative orders of segments instead of using the order provided in input prompts, therefore enabling Position-INvariant inferencE (PINE) at the segment level. By eliminating position bias, models achieve better performance and reliability in downstream tasks where position bias widely exists, such as LM-as-a-judge and retrieval-augmented QA. Notably, PINE is especially useful when adapting LMs for evaluating reasoning pairs: it consistently provides 8 to 10 percentage points performance gains in most cases, and makes Llama-3-70B-Instruct perform even better than GPT-4-0125-preview on the RewardBench reasoning subset.

Skiplists are widely used for in-memory indexing in many key-value stores, such as RocksDB and LevelDB, due to their ease of implementation and simple concurrency control mechanisms. However, traditional skiplists suffer from poor cache locality, as they store only a single element per node, leaving performance on the table. Minimizing last-level cache misses is key to maximizing in-memory index performance, making high cache locality essential. In this paper, we present a practical concurrent B-skiplist that enhances cache locality and performance while preserving the simplicity of traditional skiplist structures and concurrency control schemes. Our key contributions include a top-down, single-pass insertion algorithm for B-skiplists and a corresponding simple and efficient top-down concurrency control scheme. On 128 threads, the proposed concurrent B-skiplist achieves between 2x-9x higher throughput compared to state-of-the-art concurrent skiplist implementations, including Facebook's concurrent skiplist from Folly and the Java ConcurrentSkipListMap. Furthermore, we find that the B-skiplist achieves competitive (0.9x-1.7x) throughput on point workloads compared to state-of-the-art cache-optimized tree-based indices (e.g., Masstree). For a more complete picture of the performance, we also measure the latency of skiplist and tree-based indices and find that the B-skiplist achieves between 3.5x-103x lower 99% latency compared to other concurrent skiplists and between 0.85x-64x lower 99% latency compared to tree-based indices on point workloads with inserts.

In this paper, we introduce Positional Skip-wisE (PoSE) training for efficient adaptation of large language models~(LLMs) to extremely long context windows. PoSE decouples train length from target context window size by simulating long inputs using a fixed context window with manipulated position indices during training. Concretely, we select several short chunks from a long input sequence, and introduce distinct skipping bias terms to modify the position indices of each chunk. These bias terms, along with the length of each chunk, are altered for each training example, allowing the model to adapt to all positions within the target context window without training on full length inputs. Experiments show that, compared with fine-tuning on the full length, PoSE greatly reduces memory and time overhead with minimal impact on performance. Leveraging this advantage, we have successfully extended the LLaMA model to 128k tokens. Furthermore, we empirically confirm that PoSE is compatible with all RoPE-based LLMs and various position interpolation strategies. Notably, by decoupling fine-tuning length from target context window, PoSE can theoretically extend the context window infinitely, constrained only by memory usage for inference. With ongoing advancements for efficient inference, we believe PoSE holds great promise for scaling the context window even further.

Late-interaction retrievers handle exclusion queries poorly. When a user asks for X but not Z, the additive MaxSim score promotes documents covering Z, a problem we call exclusion inversion. We show that no readout of the frozen vectors recovers the constraint, because the difficulty lies in identifying the excluded topic, which depends on the query alone. EXCISE operates at query time and corrects the inversion while leaving the index frozen. Two query-side modules totalling 1.5M parameters identify the topic and re-embed a 100-document shortlist, and a parameter-free rule demotes candidates matching that topic. Across six collections and three backbones, EXCISE is the strongest system in all eighteen backbone-collection cells against that backbone's own frozen and fine-tuned baselines. It raises exclusion success@10 on ExcluIR from 0.058 to 0.691 and raises Boolean NOT accuracy from 0.25-0.29 to 0.90-0.92. Pooled over 1,860 queries, it outperforms every fine-tuned cross-encoder, each of which loses no-harm nDCG@10, whereas EXCISE matches its frozen baseline on its strongest backbone. We release X-BENCH, a tiered benchmark of explicit, implicit, and compound exclusions with no-harm and Boolean controls.

Long-context inference enhances the reasoning capability of Large Language Models (LLMs), but incurs significant computational overhead. Token-oriented methods, such as pruning and skipping, have shown great promise in reducing inference latency, yet still suffer from inherently insufficient structure optimization, outdated selection criteria, and redundancy interference, resulting in suboptimal speed-accuracy trade-off. To address these issues, we propose a novel training-free framework dubbed Self-Predictive Token Skipping (SPTS), for efficient long-context LLM inference. Specifically, motivated by probing the influence of target layers prior to skipping, we design two selective token skipping strategies for typical structures, including Partial Attention Probing (PAP) for multi-head attention and Low-rank Transformation Probing (LTP) for feed forward network. The former selects informative tokens via partial forward attention computation, while the latter constructs a low-rank proxy network to predict token transformations. In addition, a Multi-Stage Delayed Pruning (MSDP) strategy reallocates skipping budgets and progressively removes redundant tokens across layers. Extensive experiments display the effectiveness of our method, achieving up to 2.46times and 2.29times speedups for prefilling and end-to-end generation, respectively, while maintaining state-of-the-art accuracy. We will release the source code upon acceptance.

Retrieval Augmented Generation enhances LLM accuracy by adding passages retrieved from an external corpus to the LLM prompt. This paper investigates how positional bias - the tendency of LLMs to weight information differently based on its position in the prompt - affects not only the LLM's capability to capitalize on relevant passages, but also its susceptibility to distracting passages. Through extensive experiments on three benchmarks, we show how state-of-the-art retrieval pipelines, while attempting to retrieve relevant passages, systematically bring highly distracting ones to the top ranks, with over 60% of queries containing at least one highly distracting passage among the top-10 retrieved passages. As a result, the impact of the LLM positional bias, which in controlled settings is often reported as very prominent by related works, is actually marginal in real scenarios since both relevant and distracting passages are, in turn, penalized. Indeed, our findings reveal that sophisticated strategies that attempt to rearrange the passages based on LLM positional preferences do not perform better than random shuffling.

Positional bias (PB), manifesting as non-uniform sensitivity across different contextual locations, significantly impairs long-context comprehension and processing capabilities. While prior work seeks to mitigate PB through modifying the architectures causing its emergence, significant PB still persists. To address PB effectively, we introduce Pos2Distill, a position to position knowledge distillation framework. Pos2Distill transfers the superior capabilities from advantageous positions to less favorable ones, thereby reducing the huge performance gaps. The conceptual principle is to leverage the inherent, position-induced disparity to counteract the PB itself. We identify distinct manifestations of PB under \textsc{r}etrieval and \textsc{r}easoning paradigms, thereby designing two specialized instantiations: Pos2Distill-R\textsuperscript{1} and Pos2Distill-R\textsuperscript{2} respectively, both grounded in this core principle. By employing the Pos2Distill approach, we achieve enhanced uniformity and significant performance gains across all contextual positions in long-context retrieval and reasoning tasks. Crucially, both specialized systems exhibit strong cross-task generalization mutually, while achieving superior performance on their respective tasks.

Transformers struggle with length generalisation, displaying poor performance even on basic tasks. We test whether these limitations can be explained through two key failures of the self-attention mechanism. The first is the inability to fully remove irrelevant information. The second is tied to position, even if the dot product between a key and query is highly negative (i.e. an irrelevant key) learned positional biases may unintentionally up-weight such information - dangerous when distances become out of distribution. Put together, these two failure cases lead to compounding generalisation difficulties. We test whether they can be mitigated through the combination of a) selective sparsity - completely removing irrelevant keys from the attention softmax and b) contextualised relative distance - distance is only considered as between the query and the keys that matter. We show how refactoring the attention mechanism with these two mitigations in place can substantially improve generalisation capabilities of decoder only transformers.

Benchmark contamination is diagnosed with n-gram overlap, likelihood-based membership inference, or canary strings, and each needs something usually unavailable: the training corpus, a well-chosen test statistic, or foresight at release. A recent alternative reads it off a linear probe on internal activations. We show the natural way to do this does not work, specify one that survives measurement, then find that the correction making it work carries more variance than the null it is tested against. The protocol reports a zero-sum contrast on the depth profile of probe accuracy, recentred on a level-matched placebo baseline, tested against a label-permutation null, with the reference set twice the size of the suspect set. Each choice replaces a simpler alternative we rejected on measurement. Reporting the level of excess separability rather than its shape makes the false positive rate track the size of the analyst's own control set, 0.03 to 0.99 under a true null. Contrasting against a flat depth profile rejects a true null 0.72 of the time when surface decodability rises with depth, and loses all power when it falls. On real transformers the protocol fails a test the simulations did not pose. The recentring subtracts an estimate, and the permutation null holds it fixed. Re-estimated across split seeds on four audits of contaminated checkpoints, its standard deviation is 1.30 to 1.56 times the null's own in every arm: what is subtracted to remove a bias is more variable than what it corrects. The one nominally significant result, p = 0.0075, becomes 0.0745 once that variance is propagated, and no verdict is issued. The simulations missed this because their surface key is the covariate driving item variation; on real text it is a proxy, and degrading key quality in simulation reproduces it. We add a companion measurement and a widened null. No arm shows contamination.

LLM-based listwise passage reranking has attracted attention for its effectiveness in ranking candidate passages. However, these models suffer from positional bias, where passages positioned towards the end of the input are less likely to be moved to top positions in the ranking. We hypothesize that there are two primary sources of positional bias: (1) architectural bias inherent in LLMs and (2) the imbalanced positioning of relevant documents. To address this, we propose DebiasFirst, a method that integrates positional calibration and position-aware data augmentation during fine-tuning. Positional calibration uses inverse propensity scoring to adjust for positional bias by re-weighting the contributions of different positions in the loss function when training. Position-aware augmentation augments training data to ensure that each passage appears equally across varied positions in the input list. This approach markedly enhances both effectiveness and robustness to the original ranking across diverse first-stage retrievers, reducing the dependence of NDCG@10 performance on the position of relevant documents. DebiasFirst also complements the inference-stage debiasing methods, offering a practical solution for mitigating positional bias in reranking.

Prevailing multi-vector visual document retrievers store each page as about a thousand patch vectors, often in vector databases run by a third party. Since no one can read a page from its vectors, this index is easily treated as less sensitive than the page. However, because the index keeps one vector per patch in raster order, and each vector is computed by a vision-language model pre-trained to read documents, we hypothesize that whoever runs or breaches the store can reproduce a page from its index alone. We frame inversion as conditional document image generation and infer from the vectors what the attack needs: the encoder, the page shape and, for shuffled vectors, their order. On the ViDoRe v3 benchmark, pages inverted from raw indices recover 47% of the words and 45% of the sensitive tokens. Used as queries against the stored indices, they rank their source page first 98.4% of the time. We test two cheap protections, token pooling and shuffling, which both cut word recall to about 8%. A model that restores the order of a shuffled index raises the share of source pages ranked first from 3.8% to 93.5%, while inverting a pooled index remains open. To test generalisation, we apply the same attack unchanged to another multi-vector retriever: its inverted pages still rank their source page first 70.2% of the time, though its word recall stays below a nearest-neighbour baseline. Multi-vector visual document retrievers are therefore vulnerable to inversion through their stored index, which should be protected like the documents it encodes.

Large language models (LLMs) are increasingly capable of processing long inputs and locating specific information within them, as evidenced by their performance on the Needle in a Haystack (NIAH) test. However, while models excel at recalling surprising information, they still struggle to identify clearly omitted information. We introduce AbsenceBench to assesses LLMs' capacity to detect missing information across three domains: numerical sequences, poetry, and GitHub pull requests. AbsenceBench asks models to identify which pieces of a document were deliberately removed, given access to both the original and edited contexts. Despite the apparent straightforwardness of these tasks, our experiments reveal that even state-of-the-art models like Claude-3.7-Sonnet achieve only 69.6% F1-score with a modest average context length of 5K tokens. Our analysis suggests this poor performance stems from a fundamental limitation: Transformer attention mechanisms cannot easily attend to "gaps" in documents since these absences don't correspond to any specific keys that can be attended to. Overall, our results and analysis provide a case study of the close proximity of tasks where models are already superhuman (NIAH) and tasks where models breakdown unexpectedly (AbsenceBench).

The attention mechanism is a critical component of Large Language Models (LLMs) that allows tokens in a sequence to interact with each other, but is order-invariant. Incorporating position encoding (PE) makes it possible to address by position, such as attending to the i-th token. However, current PE methods use token counts to derive position, and thus cannot generalize to higher levels of abstraction, such as attending to the i-th sentence. In this paper, we propose a new position encoding method, Contextual Position Encoding (CoPE), that allows positions to be conditioned on context by incrementing position only on certain tokens determined by the model. This allows more general position addressing such as attending to the i-th particular word, noun, or sentence. We show that CoPE can solve the selective copy, counting and Flip-Flop tasks where popular position embeddings fail, and improves perplexity on language modeling and coding tasks.

While dense retrieval models have achieved remarkable success, rigorous evaluation of their sensitivity to the position of relevant information (i.e., position bias) remains largely unexplored. Existing benchmarks typically employ position-agnostic relevance labels, conflating the challenge of processing long contexts with the bias against specific evidence locations. To address this challenge, we introduce PosIR (Position-Aware Information Retrieval), a comprehensive benchmark designed to diagnose position bias in diverse retrieval scenarios. PosIR comprises 310 datasets spanning 10 languages and 31 domains, constructed through a rigorous pipeline that ties relevance to precise reference spans, enabling the strict disentanglement of document length from information position. Extensive experiments with 10 state-of-the-art embedding models reveal that: (1) Performance on PosIR in long-context settings correlates poorly with the MMTEB benchmark, exposing limitations in current short-text benchmarks; (2) Position bias is pervasive and intensifies with document length, with most models exhibiting primacy bias while certain models show unexpected recency bias; (3) Gradient-based saliency analysis further uncovers the distinct internal attention mechanisms driving these positional preferences. In summary, PosIR serves as a valuable diagnostic framework to foster the development of position-robust retrieval systems.

Position bias in multiple-choice LLM evaluation is widely cited as a confound in capability comparisons, but published measurements rely on single answer-order shuffles whose results confound the bias signal with content-level noise and sampling stochasticity. I introduce inspect_permute, an open-source extension to the inspect_ai evaluation framework that runs exhaustive answer-order permutations per question and reports the chi-squared / Cramer V signature of position bias with bootstrap confidence intervals. I apply the tool across four vendors (gpt-4o-mini, claude-haiku-4-5, gemini-2.5-flash, grok-3) on five MMLU subjects, 24,000 API calls under temperature-0 generation, with falsifier predictions pre-registered via a public SHA-256 hash before half the data was observed. Position bias turns out to be statistically detectable only within a roughly 60-95% base-accuracy Goldilocks zone. Below it, processing-load dominance swamps subject-specific signal; above it, ceiling effects compress the variance below the chi-squared test resolution. Detectable cells separate into two mechanism types: monotone A-to-D decrease (processing_load, in low-tier models) and non-monotone D-drop (content_ambiguity, in a narrow capability band). Standard MMLU places every frontier-tier model above the detection band, so absence of signal there should be read as not measurable, not unbiased. Together with the ceiling-effect characterisation in arXiv:2606.26185, this work brackets the detectable region of position-bias measurement and makes the field central question askable in a verifiable form. Package, data, preregistration under MIT.

We investigate document page ordering on 5,461 shuffled WOO documents (Dutch freedom of information releases) using page embeddings. These documents are heterogeneous collections such as emails, legal texts, and spreadsheets compiled into single PDFs, where semantic ordering signals are unreliable. We compare five methods, including pointer networks, seq2seq transformers, and specialized pairwise ranking models. The best performing approach successfully reorders documents up to 15 pages, with Kendall's tau ranging from 0.95 for short documents (2-5 pages) to 0.72 for 15 page documents. We observe two unexpected failures: seq2seq transformers fail to generalize on long documents (Kendall's tau drops from 0.918 on 2-5 pages to 0.014 on 21-25 pages), and curriculum learning underperforms direct training by 39% on long documents. Ablation studies suggest learned positional encodings are one contributing factor to seq2seq failure, though the degradation persists across all encoding variants, indicating multiple interacting causes. Attention pattern analysis reveals that short and long documents require fundamentally different ordering strategies, explaining why curriculum learning fails. Model specialization achieves substantial improvements on longer documents (+0.21 tau).

Embedding models are crucial for tasks in Information Retrieval (IR) and semantic similarity measurement, yet their handling of longer texts and associated positional biases remains underexplored. In this study, we investigate the impact of content position and input size on text embeddings. Our experiments reveal that embedding models, irrespective of their positional encoding mechanisms, disproportionately prioritize the beginning of an input. Ablation studies demonstrate that insertion of irrelevant text or removal at the start of a document reduces cosine similarity between altered and original embeddings by up to 12.3% more than ablations at the end. Regression analysis further confirms this bias, with sentence importance declining as position moves further from the start, even with with content-agnosticity. We hypothesize that this effect arises from pre-processing strategies and chosen positional encoding techniques. These findings quantify the sensitivity of retrieval systems and suggest a new lens towards embedding model robustness.

The recently introduced continuous Skip-gram model is an efficient method for learning high-quality distributed vector representations that capture a large number of precise syntactic and semantic word relationships. In this paper we present several extensions that improve both the quality of the vectors and the training speed. By subsampling of the frequent words we obtain significant speedup and also learn more regular word representations. We also describe a simple alternative to the hierarchical softmax called negative sampling. An inherent limitation of word representations is their indifference to word order and their inability to represent idiomatic phrases. For example, the meanings of "Canada" and "Air" cannot be easily combined to obtain "Air Canada". Motivated by this example, we present a simple method for finding phrases in text, and show that learning good vector representations for millions of phrases is possible.

Recent advances in large language models (LLMs) have enhanced their ability to process long input contexts. This development is particularly crucial for tasks that involve retrieving knowledge from an external datastore, which can result in long inputs. However, recent studies show a positional bias in LLMs, demonstrating varying performance depending on the location of useful information within the input sequence. In this study, we conduct extensive experiments to investigate the root causes of positional bias. Our findings indicate that the primary contributor to LLM positional bias stems from the inherent positional preferences of different models. We demonstrate that merely employing prompt-based solutions is inadequate for overcoming the positional preferences. To address this positional bias issue of a pre-trained LLM, we developed a Position-Aware Parameter Efficient Fine-Tuning (PAPEFT) approach which is composed of a data augmentation technique and a parameter efficient adapter, enhancing a uniform attention distribution across the input context. Our experiments demonstrate that the proposed approach effectively reduces positional bias, improving LLMs' effectiveness in handling long context sequences for various tasks that require externally retrieved knowledge.

Continuous word representations, trained on large unlabeled corpora are useful for many natural language processing tasks. Popular models that learn such representations ignore the morphology of words, by assigning a distinct vector to each word. This is a limitation, especially for languages with large vocabularies and many rare words. In this paper, we propose a new approach based on the skipgram model, where each word is represented as a bag of character n-grams. A vector representation is associated to each character n-gram; words being represented as the sum of these representations. Our method is fast, allowing to train models on large corpora quickly and allows us to compute word representations for words that did not appear in the training data. We evaluate our word representations on nine different languages, both on word similarity and analogy tasks. By comparing to recently proposed morphological word representations, we show that our vectors achieve state-of-the-art performance on these tasks.

Since self-attention layers in Transformers are permutation invariant by design, positional encodings must be explicitly incorporated to enable spatial understanding. However, fixed-size lookup tables used in traditional learnable position embeddings (PEs) limit extrapolation capabilities beyond pre-trained sequence lengths. Expert-designed methods such as ALiBi and RoPE, mitigate this limitation but demand extensive modifications for adapting to new modalities, underscoring fundamental challenges in adaptability and scalability. In this work, we present SeqPE, a unified and fully learnable position encoding framework that represents each n-dimensional position index as a symbolic sequence and employs a lightweight sequential position encoder to learn their embeddings in an end-to-end manner. To regularize SeqPE's embedding space, we introduce two complementary objectives: a contrastive objective that aligns embedding distances with a predefined position-distance function, and a knowledge distillation loss that anchors out-of-distribution position embeddings to in-distribution teacher representations, further enhancing extrapolation performance. Experiments across language modeling, long-context question answering, and 2D image classification demonstrate that SeqPE not only surpasses strong baselines in perplexity, exact match (EM), and accuracy--particularly under context length extrapolation--but also enables seamless generalization to multi-dimensional inputs without requiring manual architectural redesign. We release our code, data, and checkpoints at https://github.com/ghrua/seqpe.

Given only a few observed entries from a low-rank matrix X, matrix completion is the problem of imputing the missing entries, and it formalizes a wide range of real-world settings that involve estimating missing data. However, when there are too few observed entries to complete the matrix, what other aspects of the underlying matrix can be reliably recovered? We study one such problem setting, that of "one-sided" matrix completion, where our goal is to recover the right singular vectors of X, even in the regime where recovering the left singular vectors is impossible, which arises when there are more rows than columns and very few observations. We propose a natural algorithm that involves imputing the missing values of the matrix X^TX and show that even with only two observations per row in X, we can provably recover X^TX as long as we have at least Omega(r^2 d log d) rows, where r is the rank and d is the number of columns. We evaluate our algorithm on one-sided recovery of synthetic data and low-coverage genome sequencing. In these settings, our algorithm substantially outperforms standard matrix completion and a variety of direct factorization methods.

We investigate how looped transformers encode human preference, training lightweight evaluator heads on frozen Ouro-2.6B loop-iteration states on Anthropic HH-RLHF. v2: an erratum is prepended; the original manuscript is unchanged. A post-publication audit found the three headline results inflated by two independent evaluation errors. The 95.2% pairwise evaluator accuracy is a canonical-ordering artifact: the data were correctly split, but the evaluator learned to prefer the first-presented argument; its strict antisymmetrized accuracy on the full 8,552-pair test set is 63.9%. The 84.5% pairwise probe and the below-chance 21.75% pointwise probe were source-item leaks (orientation rows and pair partners crossing the train/test split); corrected pair-disjoint values are 56.5% and 54.2% -- above chance, so the "inverted polarity" finding is withdrawn. The central finding survives at much smaller magnitude: preference is decoded more accurately relationally than pointwise (paired +2.3 points, 95% CI [+1.3, +3.3]), and the antisymmetrized evaluator still beats the linear probe, but no corrected readout rivals end-to-end reward models. The methodological findings stand (constant-output degeneracy, flip test, swap-protocol metric deflation), with one correction: antisymmetrized accuracy, not antisymmetry correlation, certifies relational discrimination. The two errors are mutually invisible -- a split audit cannot see an ordering prior, antisymmetrization cannot see a leak -- so both checks are required. Full audit in the follow-up work (Kirin, 2026, in preparation).

Prompt tuning (PT) has long been recognized as an effective and efficient paradigm for transferring large pre-trained vision-language models (VLMs) to downstream tasks by learning a tiny set of context vectors. Nevertheless, in this work, we reveal that freezing the parameters of VLMs during learning the context vectors neither facilitates the transferability of pre-trained knowledge nor improves the memory and time efficiency significantly. Upon further investigation, we find that reducing both the length and width of the feature-gradient propagation flows of the full fine-tuning (FT) baseline is key to achieving effective and efficient knowledge transfer. Motivated by this, we propose Skip Tuning, a novel paradigm for adapting VLMs to downstream tasks. Unlike existing PT or adapter-based methods, Skip Tuning applies Layer-wise Skipping (LSkip) and Class-wise Skipping (CSkip) upon the FT baseline without introducing extra context vectors or adapter modules. Extensive experiments across a wide spectrum of benchmarks demonstrate the superior effectiveness and efficiency of our Skip Tuning over both PT and adapter-based methods. Code: https://github.com/Koorye/SkipTuning.

Large Language Models (LLMs) are increasingly applied in various real-world scenarios due to their excellent generalization capabilities and robust generative abilities. However, they exhibit position bias, also known as "lost in the middle", a phenomenon that is especially pronounced in long-context scenarios, which indicates the placement of the key information in different positions of a prompt can significantly affect accuracy. This paper first explores the micro-level manifestations of position bias, concluding that attention weights are a micro-level expression of position bias. It further identifies that, in addition to position embeddings, causal attention mask also contributes to position bias by creating position-specific hidden states. Based on these insights, we propose a method to mitigate position bias by scaling this positional hidden states. Experiments on the NaturalQuestions Multi-document QA, KV retrieval, LongBench and timeline reorder tasks, using various models including RoPE models, context windowextended models, and Alibi models, demonstrate the effectiveness and generalizability of our approach. Our method can improve performance by up to 15.2% by modifying just one dimension of hidden states. Our code is available at https://aka.ms/PositionalHidden.

We identify a previously overlooked failure mode of ALiBi positional encoding: its linear bias scaling underflows floating-point precision, which zeroes out a large fraction of attention weights and renders the affected attention heads partially blind. We analyze this failure mode, characterize its impact, and examine four mitigation strategies. We further demonstrate its occurrence in state-of-the-art pretrained models based on ALiBi. Comprehensive pretraining experiments with 148M-parameter decoder models help us to disentangle its effects from out-of-context degradation. We find that ALiBi's failure mode can substantially impair token retrieval while having only a minor effect on standard decoder benchmarks. We propose four training-time mitigation strategies and evaluate them individually and in combinations, finding that log-scaled distances yield the most consistent improvements in passkey retrieval. Despite this problem, default ALiBi slopes remain a surprisingly strong baseline, particularly for needle-in-a-haystack retrieval. Based on these findings we provide concrete recommendations on how to train models with ALiBi.

Extending the context window of large language models typically requires training on sequences at the target length, incurring quadratic memory and computational costs that make long-context adaptation expensive and difficult to reproduce. We propose EndPrompt, a method that achieves effective context extension using only short training sequences. The core insight is that exposing a model to long-range relative positional distances does not require constructing full-length inputs: we preserve the original short context as an intact first segment and append a brief terminal prompt as a second segment, assigning it positional indices near the target context length. This two-segment construction introduces both local and long-range relative distances within a short physical sequence while maintaining the semantic continuity of the training text--a property absent in chunk-based simulation approaches that split contiguous context. We provide a theoretical analysis grounded in Rotary Position Embedding and the Bernstein inequality, showing that position interpolation induces a rigorous smoothness constraint over the attention function, with shared Transformer parameters further suppressing unstable extrapolation to unobserved intermediate distances. Applied to LLaMA-family models extending the context window from 8K to 64K, EndPrompt achieves an average RULER score of 76.03 and the highest average on LongBench, surpassing LCEG (72.24), LongLoRA (72.95), and full-length fine-tuning (69.23) while requiring substantially less computation. These results demonstrate that long-context generalization can be induced from sparse positional supervision, challenging the prevailing assumption that dense long-sequence training is necessary for reliable context-window extension. The code is available at https://github.com/clx1415926/EndPrompt.

Neural document ranking approaches, specifically transformer models, have achieved impressive gains in ranking performance. However, query processing using such over-parameterized models is both resource and time intensive. In this paper, we propose the Fast-Forward index -- a simple vector forward index that facilitates ranking documents using interpolation of lexical and semantic scores -- as a replacement for contextual re-rankers and dense indexes based on nearest neighbor search. Fast-Forward indexes rely on efficient sparse models for retrieval and merely look up pre-computed dense transformer-based vector representations of documents and passages in constant time for fast CPU-based semantic similarity computation during query processing. We propose index pruning and theoretically grounded early stopping techniques to improve the query processing throughput. We conduct extensive large-scale experiments on TREC-DL datasets and show improvements over hybrid indexes in performance and query processing efficiency using only CPUs. Fast-Forward indexes can provide superior ranking performance using interpolation due to the complementary benefits of lexical and semantic similarities.

LLM rerankers add of the order of \$0.2-0.3 per 1,000 queries and about a second of tail latency on top of a graph-augmented dense pipeline such as HippoRAG2, and on three multi-hop benchmarks they improve final-hop top-K coverage on seven of nine (dataset, K) cells, by up to +34.8 pp. We ask whether a learned per-query gate can skip the reranker where it will not help, using only features available before the LLM call (27 score and lexical statistics of the two retrieval lists plus a PCA of a small query embedding) with an executable fallback. Every choice, including the fallback and the threshold, is made inside the training fold and applied once to held-out queries, and harmful skips (the rerank would have found the target, the fallback did not) are reported next to the aggregate coverage. Across nine cells on 2WikiMultiHopQA, MuSiQue and HotpotQA the gate skips 51% of calls at an average held-out LastHop@K cost of 1.2 pp; four cells meet a pre-registered 1 pp rule, harmful skips occur in eight (190 harmful against 136 beneficial), and a random gate at the same skip rate loses 2 to 11 pp on the high-lift cells. A second rule sets each cell's threshold from a pre-specified budget on the expected harmful-skip rate over Platt-calibrated harm probabilities (ECE 0.025 after calibration, 0.094 before): at a 1 pp budget the gate skips 42% at -0.8 pp with 66 harmful skips and six cells within 1 pp, but realised harm exceeds the promise in six cells (mean 1.45 vs 0.83 pp), a selection optimism we quantify; a 0.5 pp budget realises about 1 pp. The harm probabilities are calibrated but barely discriminative (AUC 0.16 to 0.70). An earlier version reported 73% "lossless" savings; that figure rested on an oracle fallback and a wrong MuSiQue target, and we document both.

Positional encoding (PE) underpins how permutation-invariant Transformers represent sequence order, yet how positional information is processed and stored remains poorly understood. Modern PE methods such as RoPE still struggle on tasks such as long-context understanding or retrieval chen-etal-2025-hope. Hence, a better understanding of the internal positional mechanism could help design better PE. Building on evidence that positional and semantic signals occupy nearly orthogonal subspaces in trained Transformers, we modify an encoder Transformer to process three explicitly disentangled streams: semantic, absolute positional (AP) and relative positional (RP), and confine the masked-language-modeling (MLM) objective to the semantic stream. This decoupling enables a clean mechanistic study and yields three take-aways. (1) The isolated AP subspace spontaneously collapses into a low-frequency two-dimensional manifold that captures the structure of the document; (2) Attention heads specialize into structure and semantic-oriented groups, with RP exclusively supporting the latter; (3) Standard positional encodings do not robustly retain macroscopic structure: RoPE and RP only weakly encode it, and entangled AP loses it in the final layers under MLM pressure. The disentangled approach preserves positional encoding, which improves linguistic representation on 49 of the 65 linguistic phenomena of the Flash-Holmes probing benchmark.

We explore different ways to utilize position-based cross-attention in seq2seq networks to enable length generalization in algorithmic tasks. We show that a simple approach of interpolating the original and reversed encoded representations combined with relative attention allows near-perfect length generalization for both forward and reverse lookup tasks or copy tasks that had been generally hard to tackle. We also devise harder diagnostic tasks where the relative distance of the ideal attention position varies with timestep. In such settings, the simple interpolation trick with relative attention is not sufficient. We introduce novel variants of location attention building on top of Dubois et al. (2020) to address the new diagnostic tasks. We also show the benefits of our approaches for length generalization in SCAN (Lake & Baroni, 2018) and CFQ (Keysers et al., 2020). Our code is available on GitHub.

Retrieval-Augmented Generation (RAG) systems rely on retrieved documents being concatenated into a model's input context, making both document ordering and context size critical yet controversial design choices. Prior work reports position-based effects such as lost in the middle and related long-context phenomena. However, empirical findings remain inconsistent and hard to reproduce across models, datasets, and evaluation protocols. In this paper, we present a systematic reproducibility study that revisits these claims and examines how they evolve with contemporary LLMs under a controlled evaluation framework. We first show that topic sampling is a major source of variance: small topic sets can mask or exaggerate ordering effects. Based on repeated subset sampling across multiple topic budgets, we provide a practical calibration procedure that identifies topic counts yielding stable trends at feasible cost. Using these fixed topic sets, we then reproduce and extend results on position sensitivity, re-evaluating lost in the middle and positional biases in modern LLMs. Then, we also study a more realistic RAG scenario in which relevance is mediated by a retriever rather than oracle access to ground-truth documents. In this setting, we re-examine a recent industry study and identify discrepancies to evaluation choices such as limited topic coverage and reliance on LLM-based judges. Finally, we conduct an analysis of how retrieval order and context size affect downstream LLM performance under imperfect retrieval. Our results demonstrate that both factors interact strongly with retrieval quality and model choice, and that conclusions drawn from idealised setups do not always transfer to real-world RAG pipelines. We release all code and configurations to support reproducibility and future work on robust RAG evaluation.

Since the introduction of the transformer model by Vaswani et al. (2017), a fundamental question has yet to be answered: how does a model achieve extrapolation at inference time for sequences that are longer than it saw during training? We first show that extrapolation can be enabled by simply changing the position representation method, though we find that current methods do not allow for efficient extrapolation. We therefore introduce a simpler and more efficient position method, Attention with Linear Biases (ALiBi). ALiBi does not add positional embeddings to word embeddings; instead, it biases query-key attention scores with a penalty that is proportional to their distance. We show that this method trains a 1.3 billion parameter model on input sequences of length 1024 that extrapolates to input sequences of length 2048, achieving the same perplexity as a sinusoidal position embedding model trained on inputs of length 2048 but training 11% faster and using 11% less memory. ALiBi's inductive bias towards recency also leads it to outperform multiple strong position methods on the WikiText-103 benchmark.

This study investigates a specific form of positional bias, termed the Myopic Trap, where retrieval models disproportionately attend to the early parts of documents while overlooking relevant information that appears later. To systematically quantify this phenomenon, we propose a semantics-preserving evaluation framework that repurposes the existing NLP datasets into position-aware retrieval benchmarks. By evaluating the SOTA models of full retrieval pipeline, including BM25, embedding models, ColBERT-style late-interaction models, and reranker models, we offer a broader empirical perspective on positional bias than prior work. Experimental results show that embedding models and ColBERT-style models exhibit significant performance degradation when query-related content is shifted toward later positions, indicating a pronounced head bias. Notably, under the same training configuration, ColBERT-style approach show greater potential for mitigating positional bias compared to the traditional single-vector approach. In contrast, BM25 and reranker models remain largely unaffected by such perturbations, underscoring their robustness to positional bias. Code and data are publicly available at: www.github.com/NovaSearch-Team/RAG-Retrieval.

Dense retrievers exhibit positional bias, favoring documents whose query-relevant information appears near the beginning and degrading retrieval performance when the information appears later. While prior work on positional bias in dense retrievers has largely focused on architectural explanations, we study how the positional distribution of evidence in training data affects retrieval-level bias direction. To test this, we construct synthetic position-targeted training sets in which query-relevant evidence appears at the beginning, middle, or end of documents, and fine-tune eight architecturally diverse pretrained models under position-skewed and balanced training distributions. At the ranking level, we observe a strong directional pattern across the examined models: skewed training distributions favor evidence at the corresponding positions. Position-balanced training reduces positional sensitivity by 57--87\% on position-aware benchmarks, with competitive mean retrieval performance in our controlled setting. Representation-level analyses further suggest that fine-tuning often reshapes learned positional preferences, although pre-existing architectural or pretraining-specific tendencies persist in some models. These results identify training-position distribution as a major controllable factor in retrieval-level position bias and suggest balanced data curation as a practical mitigation strategy.

It is well noted that coordinate based MLPs benefit -- in terms of preserving high-frequency information -- through the encoding of coordinate positions as an array of Fourier features. Hitherto, the rationale for the effectiveness of these positional encodings has been solely studied through a Fourier lens. In this paper, we strive to broaden this understanding by showing that alternative non-Fourier embedding functions can indeed be used for positional encoding. Moreover, we show that their performance is entirely determined by a trade-off between the stable rank of the embedded matrix and the distance preservation between embedded coordinates. We further establish that the now ubiquitous Fourier feature mapping of position is a special case that fulfills these conditions. Consequently, we present a more general theory to analyze positional encoding in terms of shifted basis functions. To this end, we develop the necessary theoretical formulae and empirically verify that our theoretical claims hold in practice. Codes available at https://github.com/osiriszjq/Rethinking-positional-encoding.

Standard positional encodings represent position as a one-dimensional reading-order coordinate, but reading order alone does not determine hierarchical textual structure. We use a hierarchical rotary positional encoding (hRoPE) that represents paragraph, sentence, and token indices as separate channels, hold the token sequence fixed, intervene on the paragraph coordinate p1, and measure cross-paragraph attention with a token-distance-exact estimator. Attention is compressed relative to a token-distance-matched baseline in every corpus, but compression alone is not diagnostic of true structure: an architecturally identical channel with density-matched random labels is compressed too, more shallowly. What distinguishes real structure is the depth of compression, which is greater and corpus-dependent while the control's is not. Comparing eight corpus-only quantities across three constructs (lexical persistence, paragraph length, embedding-based coherence), none fully reproduces the cross-corpus ordering of depth, though embedding-based coherence comes closest. Compression depth, not its location, is the reproducible signature of genuine paragraph structure in our setting.

We formalize prefix invariance: representations at position t must not depend on future inputs. We give a lightweight audit, two forward passes, no training or gradients, that localizes exactly where causality breaks. Attention-mask inspection is incomplete: leaks can occur via scans or normalization despite correct masks. Across 192 injected-fault trials on eight checkpoints, mask inspection found none, while our audit localized all 192/192, also finding a defect in Zamba2 and Nemotron-H.

Diffusion language models decode text by iteratively denoising masked token sequences, making the choice of which positions to decode a central inference-time decision. Most training-free decoding strategies use model confidence for position selection, assuming that high-confidence positions are ready to be decoded. In this work, we revisit this assumption by studying when confidence misleads fully non-autoregressive (fully non-AR) decoding. EOT tokens can receive high confidence and cause incomplete generation; inserting a suffix anchor can mitigate this issue but introduces local overconfidence near the anchor, causing anchor-adjacent tokens to be decoded too early. To address these issues, we propose Suffix-Anchored Confidence Modulation, a simple training-free method that inserts a short suffix anchor to encourage response completion and modulates confidence near the anchor according to decoding progress. This preserves the response-completion benefit of suffix anchoring while reducing premature decoding of anchor-adjacent tokens. Across text-only reasoning, vision-language reasoning, and code-generation benchmarks, our method consistently improves confidence-based fully non-AR decoding, outperforms explicit EOT suppression, and preserves the parallel decoding advantage of fully non-AR generation.

We previously reported a ModernBERT encoder trained from scratch for Turkish (MoganBERT-TR) and a single-vector embedding model built on top of it (MoganBERT-embed). This work introduces the third model in that lineage: MoganColBERT-TR, a multi-vector retrieval model that, instead of compressing a query or a document into a single vector, represents it at the token level through a 768->128 projection and scores it with MaxSim late interaction. The model is not trained from scratch: the embedding model's encoder is taken as the starting point and adapted to the ColBERT objective with a single-epoch distillation phase. Training data is produced from two sources - title-to-passage pairs carved out of our own pretraining corpus in the character domain and at sentence boundaries, and two Turkish question-based retrieval sets - and is distilled from the soft scores of a cross-encoder teacher (bge-reranker-v2-m3) over one positive and seven mined negatives. We show that in hard negative mining, rank-based skipping alone is insufficient and must be combined with a group mask and a cosine ceiling. Evaluation is carried out with the official pipeline of TurkColBERT, a benchmark built for Turkish late-interaction retrieval (PLAID index, exact MaxSim), on five Turkish BEIR datasets; none of them appears in our training pool, so all five results are clean zero-shot. With 148.9M parameters, MoganColBERT-TR reaches an overall score of 37.36 (35.53 nDCG@100, 31.81 nDCG@10) averaged over the five datasets and finishes second among the five models compared: it outperforms the twice-as-large ColmmBERT-base-TR on four of five datasets and by +3.05 overall, and the benchmark's largest model by +12.30. The gap to the leading model (mLateOn) is concentrated on ArguAna-TR, the dataset with by far the longest queries.

We present PharmaShip, a real-world Chinese dataset of scanned pharmaceutical shipping documents designed to stress-test pre-trained text-layout models under noisy OCR and heterogeneous templates. PharmaShip covers three complementary tasks-sequence entity recognition (SER), relation extraction (RE), and reading order prediction (ROP)-and adopts an entity-centric evaluation protocol to minimize confounds across architectures. We benchmark five representative baselines spanning pixel-aware and geometry-aware families (LiLT, LayoutLMv3-base, GeoLayoutLM and their available RORE-enhanced variants), and standardize preprocessing, splits, and optimization. Experiments show that pixels and explicit geometry provide complementary inductive biases, yet neither alone is sufficient: injecting reading-order-oriented regularization consistently improves SER and EL and yields the most robust configuration, while longer positional coverage stabilizes late-page predictions and reduces truncation artifacts. ROP is accurate at the word level but challenging at the segment level, reflecting boundary ambiguity and long-range crossings. PharmaShip thus establishes a controlled, reproducible benchmark for safety-critical document understanding in the pharmaceutical domain and highlights sequence-aware constraints as a transferable bias for structure modeling. We release the dataset at https://github.com/KevinYuLei/PharmaShip.

Due to the large number of parameters, the inference phase of Large Language Models (LLMs) is resource-intensive. Unlike traditional model compression, which needs retraining, recent dynamic computation methods show that not all components are required for inference, enabling a training-free pipeline. In this paper, we focus on the dynamic depth of LLM generation. A token-position aware layer skipping framework is proposed to save 1.5x times operations efficiently while maintaining performance. We first observed that tokens predicted later have lower perplexity and thus require less computation. Then, we propose a training-free algorithm called Position-Aware Depth Decay Decoding (D^3), which leverages a power-law decay function, leftlfloor L times (alpha^i) rightrfloor, to determine the number of layers to retain when generating token T_i. Remarkably, without any retraining, the D^3 achieves success across a wide range of generation tasks for the first time. Experiments on large language models (\ie the Llama) with 7 sim 70 billion parameters show that D^3 can achieve an average 1.5x speedup compared with the full-inference pipeline while maintaining comparable performance with nearly no performance drop (<1%) on the GSM8K and BBH benchmarks.

Prompt-tuning methods have shown comparable performance as parameter-efficient fine-tuning (PEFT) methods in various natural language understanding tasks. However, existing prompt tuning methods still utilize the entire model architecture; thus, they fail to accelerate inference speed in the application. In this paper, we propose a novel approach called SKIll-localized Prompt tuning (SKIP), which is extremely efficient in inference time. Our method significantly enhances inference efficiency by investigating and utilizing a skill-localized subnetwork in a language model. Surprisingly, our method improves the inference speed up to 160% while pruning 52% of the parameters. Furthermore, we demonstrate that our method is applicable across various transformer-based architectures, thereby confirming its practicality and scalability.

Because anomalous samples cannot be used for training, many anomaly detection and localization methods use pre-trained networks and non-parametric modeling to estimate encoded feature distribution. However, these methods neglect the impact of position and neighborhood information on the distribution of normal features. To overcome this, we propose a new algorithm, PNI, which estimates the normal distribution using conditional probability given neighborhood features, modeled with a multi-layer perceptron network. Moreover, position information is utilized by creating a histogram of representative features at each position. Instead of simply resizing the anomaly map, the proposed method employs an additional refine network trained on synthetic anomaly images to better interpolate and account for the shape and edge of the input image. We conducted experiments on the MVTec AD benchmark dataset and achieved state-of-the-art performance, with 99.56\% and 98.98\% AUROC scores in anomaly detection and localization, respectively.

Multiple-choice benchmarks are widely used to evaluate large language models, but MCQ scores conflate knowledge with sensitivity to option order, which makes them unreliable measures of model knowledge. In this paper, we test whether preventing a model from seeing option labels while committing to an answer removes positional influence and, in turn, improves performance. We evaluate two different strategies for mitigating bias. The first uses a generation-then-matching approach, and the second scores options in isolation, which is positionally unbiased by construction. Neither reliably improves accuracy. A complete decomposition shows that the bottleneck is withholding options, not the matching step. The only configuration that consistently matches the baseline is the one that shows the model all options paired with an LLM matcher. However, eliminating positional influence entirely still does not reliably yield accuracy gains, while cyclic permutation often improves them. For two-stage prompting, an aggregate measure of recall imbalance and a direct per-question measure of order sensitivity both fail to show reliable debiasing.

So far, expensive finetuning beyond the pretraining sequence length has been a requirement for effectively extending the context of language models (LM). In this work, we break this key bottleneck by Dropping the Positional Embeddings of LMs after training (DroPE). Our simple method is motivated by three key theoretical and empirical observations. First, positional embeddings (PEs) serve a crucial role during pretraining, providing an important inductive bias that significantly facilitates convergence. Second, over-reliance on this explicit positional information is also precisely what prevents test-time generalization to sequences of unseen length, even when using popular PE-scaling methods. Third, positional embeddings are not an inherent requirement of effective language modeling and can be safely removed after pretraining, following a short recalibration phase. Empirically, DroPE yields seamless zero-shot context extension without any long-context finetuning, quickly adapting pretrained LMs without compromising their capabilities in the original training context. Our findings hold across different models and dataset sizes, far outperforming previous specialized architectures and established rotary positional embedding scaling methods.

Positional embeddings (PE) in Transformers encode token distance and order but are largely agnostic to syntactic structure. We introduce Syntax-informed Positional Embeddings (SiPE), which learns a lightweight syntactic prior from dependency parses during pretraining and injects it across all three dominant PE families (absolute, relative, rotary), for both encoders and decoders, leaving self-attention and the rest of the architecture untouched. We isolate where and how the prior should enter the model, and find it depends on the architecture: for autoregressive decoders that use relative PE, the prior is strongest when coupled multiplicatively with the relative-position term of the attention score, outperforming injection into the input embeddings, into self-attention, or into the positional and attention terms jointly---while for encoders it is best added directly to the input embeddings, composing with each encoder's native positional mechanism. We find that models pre-trained with SiPE improve on the SyntaxGym benchmark by up to 10.3% while simultaneously reducing perplexity by 9.0% over a base model with no syntactic supervision---a metric nearly every existing syntax-injection method instead degrades. Crucially, these gains extend beyond syntactic generalization: SiPE also improves real-world language understanding, raising scores on the GLUE benchmark by up to 8.2% over a model trained without it. Unlike existing syntactic language models that marginalize over many parses at inference or discard syntax at runtime, SiPE conditions on a single parse, establishing a new Pareto frontier between syntactic supervision and inference cost.

Rotary Position Embedding (RoPE) in Transformer models has inherent limits that weaken length extrapolation. We reinterpret the attention map with positional encoding as a noisy feature map, and propose Denoising Positional Encoding (DoPE), a training-free method based on truncated matrix entropy to detect outlier frequency bands in the feature map. Leveraging the noise characteristics of the feature map, we further reparameterize it with a parameter-free Gaussian distribution to achieve robust extrapolation. Our method theoretically reveals the underlying cause of the attention sink phenomenon and its connection to truncated matrix entropy. Experiments on needle-in-a-haystack and many-shot in-context learning tasks demonstrate that DoPE significantly improves retrieval accuracy and reasoning stability across extended contexts (up to 64K tokens). The results show that the denoising strategy for positional embeddings effectively mitigates attention sinks and restores balanced attention patterns, providing a simple yet powerful solution for improving length generalization. Our project page is Project: https://The-physical-picture-of-LLMs.github.io

Positional embeddings (PE) play a crucial role in Vision Transformers (ViTs) by providing spatial information otherwise lost due to the permutation invariant nature of self attention. While absolute positional embeddings (APE) have shown theoretical advantages over relative positional embeddings (RPE), particularly due to the ability of sinusoidal functions to preserve spatial inductive biases like monotonicity and shift invariance, a fundamental challenge arises when mapping a 2D grid to a 1D sequence. Existing methods have mostly overlooked or never explored the impact of patch ordering in positional embeddings. To address this, we propose LOOPE, a learnable patch-ordering method that optimizes spatial representation for a given set of frequencies, providing a principled approach to patch order optimization. Empirical results show that our PE significantly improves classification accuracy across various ViT architectures. To rigorously evaluate the effectiveness of positional embeddings, we introduce the "Three Cell Experiment", a novel benchmarking framework that assesses the ability of PEs to retain relative and absolute positional information across different ViT architectures. Unlike standard evaluations, which typically report a performance gap of 4 to 6% between models with and without PE, our method reveals a striking 30 to 35% difference, offering a more sensitive diagnostic tool to measure the efficacy of PEs. Our experimental analysis confirms that the proposed LOOPE demonstrates enhanced effectiveness in retaining both relative and absolute positional information.

Reordering multiple-choice options can change a model's answer, an effect studied as selection bias (a preference for certain option letters) and as order sensitivity (changes in answers across option orderings). We connect these perspectives through the pooled selection-rate standard deviation (pooled SD), which measures how unevenly option letters are selected across questions and orderings. When every option of each question appears equally often at each position, the pooled SD is exactly the product of two label-free factors: the flip rate and the positional skew. The flip rate is the fraction of questions whose chosen option changes across orderings; the positional skew is the standard deviation of option-letter selection rates among those questions. Across 41 checkpoints and 12 benchmarks, the flip rate tracks accuracy and output uncertainty, while the positional skew tracks the estimated option-symbol prior. Prior correction for selection bias mainly reduces the positional skew. Aggregating each ordering with its reversal, a mitigation for order sensitivity, mainly reduces the flip rate. Both reduce the range of accuracy across correct-answer letters by similar amounts, but aggregation leaves fewer model-rank reversals. Applying prior correction before aggregation reduces both factors and further narrows this accuracy range. However, aggregation lowers the flip rate partly by settling questions on the same wrong option. We therefore recommend reporting both factors to distinguish mitigation effects, alongside accuracy to distinguish stability from correctness.

Recent studies show that paddings in convolutional neural networks encode absolute position information which can negatively affect the model performance for certain tasks. However, existing metrics for quantifying the strength of positional information remain unreliable and frequently lead to erroneous results. To address this issue, we propose novel metrics for measuring (and visualizing) the encoded positional information. We formally define the encoded information as PPP (Position-information Pattern from Padding) and conduct a series of experiments to study its properties as well as its formation. The proposed metrics measure the presence of positional information more reliably than the existing metrics based on PosENet and a test in F-Conv. We also demonstrate that for any extant (and proposed) padding schemes, PPP is primarily a learning artifact and is less dependent on the characteristics of the underlying padding schemes.

Spurious correlations allow flexible models to predict well during training but poorly on related test distributions. Recent work has shown that models that satisfy particular independencies involving correlation-inducing nuisance variables have guarantees on their test performance. Enforcing such independencies requires nuisances to be observed during training. However, nuisances, such as demographics or image background labels, are often missing. Enforcing independence on just the observed data does not imply independence on the entire population. Here we derive mmd estimators used for invariance objectives under missing nuisances. On simulations and clinical data, optimizing through these estimates achieves test performance similar to using estimators that make use of the full data.

We study retrieval over catalogs of structured metadata, where each record is a small schema whose fields answer different kinds of query. Embedding a record with a text encoder first serializes its fields into a string, which forces a choice of field order. We show this choice, usually treated as an implementation detail, silently controls retrieval quality once the encoder is fine-tuned. A standard fine-tune loses 7.4 nDCG@10 points when the index is rebuilt under a different field order, because it reads absolute position instead of the field labels. We propose permutation-invariant fine-tuning (PI-FT), which serializes each record under a freshly sampled field order with random field dropout, so meaning binds to the labels rather than to position. The change is about two lines in the data loader; it costs negligible in-distribution accuracy and cuts the order-change penalty to 0.2 points. We study this in the discovery of development statistics, a catalog of nearly 10,000 indicators that should be searchable in many languages by a model small enough to self-host. As AI assistants and agents increasingly mediate access to public data and statistics, this retrieval step decides whether an answer is grounded in the right indicator or series, making discoverability a precondition for disseminating data through AI. Because usage logs cannot provide training signal for indicators no one has searched, we generate the queries instead. DevDataBench is a fully LLM-generated benchmark of grounded, facet-targeted queries across 15 languages, covering every indicator for both training and evaluation. A fine-tuned 118M-parameter CPU encoder outperforms every zero-shot baseline, including text-embedding-3-large (0.707 vs.\ 0.556 nDCG@10), with the largest gains in low-resource languages. We release the benchmark, pipeline, models, and a reusable PI-FT framework.

Despite their remarkable capabilities, Large Language Models (LLMs) are found to be surprisingly sensitive to minor variations in prompts, often generating significantly divergent outputs in response to minor variations in the prompts, such as spelling errors, alteration of wording or the prompt template. However, while assessing the quality of an LLM, the focus often tends to be solely on its performance on downstream tasks, while very little to no attention is paid to prompt sensitivity. To fill this gap, we propose POSIX - a novel PrOmpt Sensitivity IndeX as a reliable measure of prompt sensitivity, thereby offering a more comprehensive evaluation of LLM performance. The key idea behind POSIX is to capture the relative change in loglikelihood of a given response upon replacing the corresponding prompt with a different intent-preserving prompt. We provide thorough empirical evidence demonstrating the efficacy of POSIX in capturing prompt sensitivity and subsequently use it to measure and thereby compare prompt sensitivity of various open-source LLMs. We find that merely increasing the parameter count or instruction tuning does not necessarily reduce prompt sensitivity whereas adding some few-shot exemplars, even just one, almost always leads to significant decrease in prompt sensitivity. We also find that alterations to prompt template lead to the highest sensitivity in the case of MCQ type tasks, whereas paraphrasing results in the highest sensitivity in open-ended generation tasks. The code for reproducing our results is open-sourced at https://github.com/kowndinya-renduchintala/POSIX.

Long-context large language models (LLMs) inference is increasingly critical, motivating a number of studies devoted to alleviating the substantial storage and computational costs in such scenarios. Layer-wise skipping methods are promising optimizations but rarely explored in long-context inference. We observe that existing layer-wise skipping strategies have several limitations when applied in long-context inference, including the inability to adapt to model and context variability, disregard for sublayer significance, and inapplicability for the prefilling phase. This paper proposes \sysname, an adaptive sublayer skipping method specifically designed for long-context inference. \sysname adaptively identifies less important layers by leveraging on-the-fly similarity information, enables sublayer-wise skipping, and accelerates both the prefilling and decoding phases. The effectiveness of \sysname is demonstrated through extensive experiments on various long-context benchmarks and models, showcasing its superior inference performance over existing baselines.

Information Retrieval using dense low-dimensional representations recently became popular and showed out-performance to traditional sparse-representations like BM25. However, no previous work investigated how dense representations perform with large index sizes. We show theoretically and empirically that the performance for dense representations decreases quicker than sparse representations for increasing index sizes. In extreme cases, this can even lead to a tipping point where at a certain index size sparse representations outperform dense representations. We show that this behavior is tightly connected to the number of dimensions of the representations: The lower the dimension, the higher the chance for false positives, i.e. returning irrelevant documents.

Tables are ubiquitous across various domains for concisely representing structured information. Empowering large language models (LLMs) to reason over tabular data represents an actively explored direction. However, since typical LLMs only support one-dimensional~(1D) inputs, existing methods often flatten the two-dimensional~(2D) table structure into a sequence of tokens, which can severely disrupt the spatial relationships and result in an inevitable loss of vital contextual information. In this paper, we first empirically demonstrate the detrimental impact of such flattening operations on the performance of LLMs in capturing the spatial information of tables through two elaborate proxy tasks. Subsequently, we introduce a simple yet effective positional encoding method, termed ``2D-TPE'' (Two-Dimensional Table Positional Encoding), to address this challenge. 2D-TPE enables each attention head to dynamically select a permutation order of tokens within the context for attending to them, where each permutation represents a distinct traversal mode for the table, such as column-wise or row-wise traversal. 2D-TPE effectively mitigates the risk of losing essential spatial information while preserving computational efficiency, thus better preserving the table structure. Extensive experiments across five benchmarks demonstrate that 2D-TPE outperforms strong baselines, underscoring the importance of preserving the table structure for accurate table comprehension. Comprehensive analysis further reveals the substantially better scalability of 2D-TPE to large tables than baselines.

Autoregressive language models are least accurate at the beginning of a sequence, where little context forces reliance on a generic pretraining prior. We show that this cold-start penalty is domain dependent and reduce it with a domain-conditional position offset: a single learned vector added to the embedding activation at the first sequence positions while all model weights remain frozen. The offset trains in minutes on roughly one hundred documents, switches between domains without added sequence state, and has no measurable latency overhead. Across eight Mamba, GPT-NeoX, and Llama models spanning 410M to 8B parameters, it reduces held-out in-domain perplexity by up to 27%; the effect persists at 70B, and one position captures most of the benefit. A matched, converged direct logit-bias correction reaches at most only 7.9% and leaves later-token loss unchanged, showing that the offset propagates through model state rather than merely recalibrating the output prior. A tuned LoRA reaches lower perplexity but uses two to three orders of magnitude more parameters and an active low-rank weight path, while soft prompts add sequence positions. With wrong-domain controls, offsets improve retrieval reranking and domain classification when decisions depend on early in-domain tokens, For the few-shot reasoning whose signal occurs later, the results maintains unchanged. Position-aware prefill application also help generation tasks, whereas naive application at every cached decoding step causes repetition. The offset is therefore not the strongest adapter, but a lightweight, hot switchable tool for short in-domain scoring and calibration.

Missing data in tabular datasets forces practitioners into a hard choice: deploy a general-purpose imputer that may perform poorly for the problem at hand, or wait for someone to design a specialized algorithm. This problem is worsened by the fact that real-world missingness rarely satisfies the textbook missing completely at random (MCAR) assumption, as entries are often missing not at random (MNAR), where the probability of being observed depends on the missing data itself. We collapse this trade-off into a single pre-training pipeline that builds transformer-based imputation specialists through three components: an entry-wise featurization that recasts imputation as supervised prediction over row--column context, a synthetic data generator with pluggable missingness modules, and prior-data fitting on millions of synthetic tables. Swapping only the missingness module, with no changes to architecture, loss, or training, yields a pattern-specific specialist that outperforms methods purpose-built for that pattern. We validate this on MissBench, a new benchmark of 42 OpenML datasets and 11 missingness patterns (including 9 MNAR variants) spanning medicine, finance, and engineering. Remarkably, training exclusively on MCAR yields a default model---TabImpute---robust across all tested patterns. In addition, the pattern-specific specialists produced by our pipeline outperform the 14 established baselines on their target patterns. We open-source the pipeline, models, and benchmark.

Large-taxonomy retrieval often assumes that the input already expresses the target concept. In many settings, however, the input is indirect evidence, such as a table cell whose meaning depends on its row, column, datatype, and context. We call this mismatch the retrieval readiness gap. Our analysis shows that the current index retrieves the target reliably when its semantics are explicit, while raw evidence often leaves it deep in the ranking. We propose Factorized Hypothesis Search (FHS), which maintains multiple partial interpretations over named semantic dimensions. These hypotheses support structured query rendering, multi-hypothesis retrieval, and dimension-level candidate verification. On both financial taxonomy tagging and CodiEsp clinical coding tasks, FHS achieves the best Recall@1, MRR, and final accuracy among the non-oracle methods. Replacing the factorized hypothesis path with a free-text ensemble causes the largest drop in head-ranking performance, while sequential refinement provides no additional gain over FHS's strong parallel first round.

Large language models exhibit positional bias -- systematic neglect of information at specific context positions -- yet its interplay with linguistic diversity remains poorly understood. We present a cross-linguistic study across five typologically distinct languages (English, Russian, German, Hindi, Vietnamese), examining how positional bias interacts with model uncertainty, syntax, and prompting. Key findings: (1) Positional bias is model-driven, with language-specific variations -- Qwen2.5-7B favors late positions, challenging assumptions of early-token bias; (2) Explicit positional guidance (e.g., correct context is at position X) reduces accuracy across languages, undermining prompt-engineering practices; (3) Aligning context with positional bias increases entropy, yet minimal entropy does not predict accuracy. (4) We further uncover that LLMs differently impose dominant word order in free-word-order languages like Hindi.

Multimodal large language models (MLLMs) excel at high-level reasoning yet fail on OCR tasks where fine-grained visual details are compromised or misaligned. We identify an overlooked optimization issue in multi-layer feature fusion. Skip pathways introduce direct back-propagation paths from high-level semantic objectives to early visual layers. This mechanism overwrites low-level signals and destabilizes training. To mitigate this gradient interference, we propose Detached Skip-Links, a minimal modification that reuses shallow features in the forward pass while stopping gradients through the skip branch during joint training. This asymmetric design reduces gradient interference, improving stability and convergence without adding learnable parameters. To diagnose whether fine-grained information is preserved and usable by an LLM, we introduce R-Probe, which measures pixel-level reconstructability of projected visual tokens using a shallow decoder initialized from the first quarter of the LLM layers. Across multiple ViT backbones and multimodal benchmarks, and at scales up to 7M training samples, our approach consistently improves OCR-centric benchmarks and delivers clear gains on general multimodal tasks.

Many recent text-to-speech (TTS) systems are built on transformer architectures and employ cross-attention mechanisms for text-speech alignment. Within these systems, rotary position embedding (RoPE) is commonly used to encode positional information in text and speech representations. In this work, we introduce length-aware RoPE (LARoPE), a simple yet effective extension of RoPE that improves text-speech alignment. Unlike RoPE, which relies on absolute indices, LARoPE computes relative distances between query and key positions using length-normalized indices. Experimental results show that LARoPE consistently outperforms RoPE, offering faster loss convergence, more accurate text-speech alignment, and higher overall TTS quality. Furthermore, LARoPE demonstrates greater resilience to variations in utterance duration and maintains stable performance in extended speech generation up to 30 seconds, whereas RoPE suffers from notable degradation. Notably, our method achieves a state-of-the-art word error rate on a standard zero-shot TTS benchmark.

Autoregressive models, such as the GPT family, use a fixed order, usually left-to-right, to generate sequences. However, this is not a necessity. In this paper, we challenge this assumption and show that by simply adding a positional encoding for the output, this order can be modulated on-the-fly per-sample which offers key advantageous properties. It allows for the sampling of and conditioning on arbitrary subsets of tokens, and it also allows sampling in one shot multiple tokens dynamically according to a rejection strategy, leading to a sub-linear number of model evaluations. We evaluate our method across various domains, including language modeling, path-solving, and aircraft vertical rate prediction, decreasing the number of steps required for generation by an order of magnitude.

Grounded language-model pipelines can be divided into three stages: selecting an object, retrieving passages for it, and using that evidence to answer. If the selected object must reach the reader, losing it breaks the handoff. Benchmark recall checks the dataset-linked object, which can differ. We audit 600 HybridQA questions across three selector families. On 1,463 resolvable records where the selected object matches the dataset-traced passage, exact key lookup and exact title matching return the object every time. With every ranked rule given the same decoded selected title, body-only BM25 omits it on 389 records (26.6%) at cutoff five, while hybrid retrieval with reranking omits it on 14 (1.0%). The two identities differ on 329 of 1,792 resolvable records. With original-question rankings, their top-five checks disagree on 106 records (5.9%). Frozen reader comparisons associate the aligned object's presence with 28.6 to 31.0 points higher exact match. In a deliberately selected 64-item cohort, removing that passage sharply lowers exact match, while removing a similar-length comparison passage does not reproduce the drop. We release the Returned-Object Profile (ROP), an executable record of the target, returned-ID field, cutoff, membership rule, and complete expected population, with data and an offline replay.

Handwritten Mathematical Expression Recognition (HMER) has wide applications in human-machine interaction scenarios, such as digitized education and automated offices. Recently, sequence-based models with encoder-decoder architectures have been commonly adopted to address this task by directly predicting LaTeX sequences of expression images. However, these methods only implicitly learn the syntax rules provided by LaTeX, which may fail to describe the position and hierarchical relationship between symbols due to complex structural relations and diverse handwriting styles. To overcome this challenge, we propose a position forest transformer (PosFormer) for HMER, which jointly optimizes two tasks: expression recognition and position recognition, to explicitly enable position-aware symbol feature representation learning. Specifically, we first design a position forest that models the mathematical expression as a forest structure and parses the relative position relationships between symbols. Without requiring extra annotations, each symbol is assigned a position identifier in the forest to denote its relative spatial position. Second, we propose an implicit attention correction module to accurately capture attention for HMER in the sequence-based decoder architecture. Extensive experiments validate the superiority of PosFormer, which consistently outperforms the state-of-the-art methods 2.03%/1.22%/2.00%, 1.83%, and 4.62% gains on the single-line CROHME 2014/2016/2019, multi-line M2E, and complex MNE datasets, respectively, with no additional latency or computational cost. Code is available at https://github.com/SJTU-DeepVisionLab/PosFormer.

Recent large language models (LLMs) support long contexts ranging from 128K to 1M tokens. A popular method for evaluating these capabilities is the needle-in-a-haystack (NIAH) test, which involves retrieving a "needle" (relevant information) from a "haystack" (long irrelevant context). Extensions of this approach include increasing distractors, fact chaining, and in-context reasoning. However, in these benchmarks, models can exploit existing literal matches between the needle and haystack to simplify the task. To address this, we introduce NoLiMa, a benchmark extending NIAH with a carefully designed needle set, where questions and needles have minimal lexical overlap, requiring models to infer latent associations to locate the needle within the haystack. We evaluate 12 popular LLMs that claim to support contexts of at least 128K tokens. While they perform well in short contexts (<1K), performance degrades significantly as context length increases. At 32K, for instance, 10 models drop below 50% of their strong short-length baselines. Even GPT-4o, one of the top-performing exceptions, experiences a reduction from an almost-perfect baseline of 99.3% to 69.7%. Our analysis suggests these declines stem from the increased difficulty the attention mechanism faces in longer contexts when literal matches are absent, making it harder to retrieve relevant information.

Sequence learning reduces to similarity-based retrieval over a temporally indexed representation space, a constraint on any sequence model, not a property of a specific architecture. We show that a spiking Sparse Distributed Memory sequence machine (2007) and the transformer (2017) independently instantiate the same five functional operations (encoding, context maintenance, associative retrieval, storage, and decoding), with cosine similarity as the shared retrieval primitive in both. We formalise a Phase-Latency Isomorphism showing that sinusoidal positional phase and spike timing are linearly related, and prove that dot product attention is invariant to this mapping up to a global scale factor on the positional component (Lemma 1). Empirically, frequency-compressed positional encoding fails to converge on a positionally demanding copy task, while a learned rank-based embedding matches or exceeds sinusoidal encoding, indicating that the critical property for positional representation is distance discriminability under dot-product similarity, not sinusoidal form. Time, phase, and rank are three instantiations of the same computational primitive, an ordered index whose structure survives similarity-based retrieval.

Transformer-based Large Language Models (LLMs) struggle to process inputs exceeding their training context window, with performance degrading due to positional out-of-distribution (O.O.D.) that disrupt attention computations. Existing solutions, fine-tuning and training-free methods, are limited by computational inefficiency, attention logit outliers or loss of local positional information. To address this, we propose Greedy Attention Logit Interpolation (GALI), a training-free length extrapolation method that maximizes the utilization of pretrained positional intervals while avoiding attention logit outliers through attention logit interpolation. The result demonstrates that GALI consistently outperforms state-of-the-art training-free methods. Our findings reveal that LLMs interpret positional intervals unevenly within their training context window, suggesting that extrapolating within a smaller positional interval range yields superior results-even for short-context tasks. GALI represents a significant step toward resolving the positional O.O.D. challenge, enabling more reliable long-text understanding in LLMs. Our implementation of GALI, along with the experiments from our paper, is open-sourced at https://github.com/AcademyCityL/GALI.

Rotary Positional Encoding (RoPE) is widely used in modern large language models. However, when sequences are extended beyond the range seen during training, rotary phases can enter out-of-distribution regimes, leading to spurious long-range alignments, diffuse attention, and degraded retrieval. Existing remedies only partially address these failures, as they often trade local positional resolution for long-context stability. We propose GAPE (Gated Adaptive Positional Encoding), a drop-in augmentation for positional encodings that introduces a content-aware bias directly into the attention logits while preserving the rotary geometry. GAPE decouples distance-based suppression from token importance through a query-dependent gate that contracts irrelevant context and a key-dependent gate that preserves salient distant tokens. We prove that protected tokens remain accessible, while the attention mass assigned to unprotected distant tokens decays as a function of the query gate. We further show that GAPE can be implemented within standard scaled dot-product attention. We validate these properties empirically, finding that GAPE consistently yields sharper attention and improved long-context robustness over rotary baselines across both synthetic retrieval and long-context benchmarks.

Position encoding (PE), an essential part of self-attention networks (SANs), is used to preserve the word order information for natural language processing tasks, generating fixed position indices for input sequences. However, in cross-lingual scenarios, e.g. machine translation, the PEs of source and target sentences are modeled independently. Due to word order divergences in different languages, modeling the cross-lingual positional relationships might help SANs tackle this problem. In this paper, we augment SANs with cross-lingual position representations to model the bilingually aware latent structure for the input sentence. Specifically, we utilize bracketing transduction grammar (BTG)-based reordering information to encourage SANs to learn bilingual diagonal alignments. Experimental results on WMT'14 EnglishRightarrowGerman, WAT'17 JapaneseRightarrowEnglish, and WMT'17 ChineseLeftrightarrowEnglish translation tasks demonstrate that our approach significantly and consistently improves translation quality over strong baselines. Extensive analyses confirm that the performance gains come from the cross-lingual information.

Autoregressive Large Language Models (e.g., LLaMa, GPTs) are omnipresent achieving remarkable success in language understanding and generation. However, such impressive capability typically comes with a substantial model size, which presents significant challenges for autoregressive token-by-token generation. To mitigate computation overload incurred during generation, several early-exit and layer-dropping strategies have been proposed. Despite some promising success due to the redundancy across LLMs layers on metrics like Rough-L/BLUE, our careful knowledge-intensive evaluation unveils issues such as generation collapse, hallucination of wrong facts, and noticeable performance drop even at the trivial exit ratio of 10-15% of layers. We attribute these errors primarily to ineffective handling of the KV cache through state copying during early-exit. In this work, we observed the saturation of computationally expensive feed-forward blocks of LLM layers and proposed FFN-SkipLLM, which is a novel fine-grained skip strategy of autoregressive LLMs. More specifically, FFN-SkipLLM is an input-adaptive feed-forward skipping strategy that can skip 25-30% of FFN blocks of LLMs with marginal change in performance on knowledge-intensive generation tasks without any requirement to handle KV cache. Our extensive experiments and ablation across benchmarks like MT-Bench, Factoid-QA, and variable-length text summarization illustrate how our simple and ease-at-use method can facilitate faster autoregressive decoding.

Inasmuch as the removal of refusal behavior from instruction-tuned language models by directional abliteration requires the extraction of refusal-mediating directions from the residual stream activation space, and inasmuch as the construction of the contrast baseline against which harmful prompt activations are compared has been treated in the existing literature as an implementation detail rather than a methodological concern, the present work investigates whether a topically matched contrast baseline yields superior refusal directions. The investigation is carried out on the Qwen~3.5 2B model using per-category matched prompt pairs, per-class Self-Organizing Map extraction, and Singular Value Decomposition orthogonalization. It was found that topic-matched contrast produces no functional refusal directions at any tested weight level on any tested layer, while unmatched contrast on the same model, same extraction code, and same evaluation protocol achieves complete refusal elimination on six layers. The geometric analysis of the failure establishes that topic-matched subtraction cancels the dominant activation component shared between harmful and harmless prompts of the same subject, reducing the extracted direction magnitude below the threshold at which weight-matrix projection perturbs the residual stream. The implications for the design of contrast baselines in abliteration research are discussed.

We study the efficiency of multi-vector retrieval methods like ColBERT and its recent variant XTR. We introduce WARP, a retrieval engine that drastically improves the efficiency of XTR-based ColBERT retrievers through three key innovations: (1) WARP_SELECT for dynamic similarity imputation, (2) implicit decompression to bypass costly vector reconstruction, and (3) a two-stage reduction process for efficient scoring. Combined with optimized C++ kernels and specialized inference runtimes, WARP reduces end-to-end latency by 41x compared to XTR's reference implementation and thereby achieves a 3x speedup over PLAID from the the official ColBERT implementation. We study the efficiency of multi-vector retrieval methods like ColBERT and its recent variant XTR. We introduce WARP, a retrieval engine that drastically improves the efficiency of XTR-based ColBERT retrievers through three key innovations: (1) WARP_SELECT for dynamic similarity imputation, (2) implicit decompression during retrieval, and (3) a two-stage reduction process for efficient scoring. Thanks also to highly-optimized C++ kernels and to the adoption of specialized inference runtimes, WARP can reduce end-to-end query latency relative to XTR's reference implementation by 41x. And it thereby achieves a 3x speedup over the official ColBERTv2 PLAID engine, while preserving retrieval quality.

Abliteration, the removal of refusal capabilities from large language models by projecting weight matrices orthogonal to an extracted refusal direction, has emerged as a prominent safety concern through its ability to bypass post-training alignment using only a small set of contrastive prompts. We find that existing defenses commonly overlook the cause of abliteration; that is, how easily the refusal direction can be extracted. To hinder this process, we introduce a weight-editing method that obscures the refusal signal by applying rank-k updates to residual stream writer matrices while replacing refusal-inducing activations with random aliases and correcting downstream reader matrices to preserve the model's original behavior. On Llama-3-8B, AMRA improves post-abliteration refusal scores by 2.16 points over the undefended baseline with less than 0.5 percentage points of MMLU degradation. On Gemma-2-9B, it improves the post-abliteration refusal by 14.70 points over the baseline while keeping harmful output rates similar to the baseline, albeit at a greater utility cost.

Real-world instructions with multiple constraints pose a significant challenge to existing large language models (LLMs). An observation is that the LLMs exhibit dramatic performance fluctuation when disturbing the order of the incorporated constraints. Yet, none of the existing works has systematically investigated this position bias problem in the field of multi-constraint instruction following. To bridge this gap, we design a probing task where we quantitatively measure the difficulty distribution of the constraints by a novel Difficulty Distribution Index (CDDI). Through the experimental results, we find that LLMs are more performant when presented with the constraints in a ``hard-to-easy'' order. This preference can be generalized to LLMs with different architecture or different sizes of parameters. Additionally, we conduct an explanation study, providing an intuitive insight into the correlation between the LLM's attention and constraint orders. Our code and dataset are publicly available at https://github.com/meowpass/PBIF.

Large language models (LLMs) exhibit positional bias in how they use context, which especially complicates listwise ranking. To address this, we propose permutation self-consistency, a form of self-consistency over ranking list outputs of black-box LLMs. Our key idea is to marginalize out different list orders in the prompt to produce an order-independent ranking with less positional bias. First, given some input prompt, we repeatedly shuffle the list in the prompt and pass it through the LLM while holding the instructions the same. Next, we aggregate the resulting sample of rankings by computing the central ranking closest in distance to all of them, marginalizing out prompt order biases in the process. Theoretically, we prove the robustness of our method, showing convergence to the true ranking in the presence of random perturbations. Empirically, on five list-ranking datasets in sorting and passage reranking, our approach improves scores from conventional inference by up to 7-18% for GPT-3.5 and 8-16% for LLaMA v2 (70B), surpassing the previous state of the art in passage reranking. Our code is at https://github.com/castorini/perm-sc.

The inference demand for LLMs has skyrocketed in recent months, and serving models with low latencies remains challenging due to the quadratic input length complexity of the attention layers. In this work, we investigate the effect of dropping MLP and attention layers at inference time on the performance of Llama-v2 models. We find that dropping dreeper attention layers only marginally decreases performance but leads to the best speedups alongside dropping entire layers. For example, removing 33\% of attention layers in a 13B Llama2 model results in a 1.8\% drop in average performance over the OpenLLM benchmark. We also observe that skipping layers except the latter layers reduces performances for more layers skipped, except for skipping the attention layers.

Many localized large language model (LLM) unlearning methods select a small parameter subset from a localization signal and keep it fixed during optimization. The parameters most associated with a target, however, need not be the best ones to update, and candidate interventions can change value as optimization proceeds. In a controlled experiment, a storage-localization score reaches an area under the receiver operating characteristic curve (AUROC) of 0.981, yet storage identity agrees with the better intervention on only 17/36 targets, while low-rank adaptation (LoRA) wins 35/36. We introduce Intervention Score, which ranks editable groups by the predicted effect of the actual unlearning update while accounting for collateral damage, and use it to form the static intervention-value baseline (Static-IV). We then introduce selective dynamic intervention re-ranking (DIR-R), which revisits that subset only when a calibrated probe justifies the comparison. On the Natural-TOFU dataset, our method has positive descriptive margins in 19/20 comparisons between methods and objectives, although several are near zero. On the LACUNA localization-precision benchmark, our mean terminal utility is higher in all six negative preference optimization (NPO) and SimNPO comparisons: NPO margins range from +0.431 to +0.848, and SimNPO margins range from +0.503 to +0.571. The gradient-difference (GradDiff) objective reveals substantial field dependence. Relative to Static-IV, the primary four-field GradDiff evaluation has six wins, six ties, and no losses, with mean and median paired gains of +0.165 and +0.0025. The evidence supports separating localization, initial intervention selection, and checkpoint-dependent support revision.

Large language model (LLM) agents repeatedly load reusable content, such as skills, documents, and memory entries, into the current context. Re-encoding this content for every request wastes computation. Position-independent caching (PIC) alleviates this by encoding each artifact independently and reusing its key-value (KV) states at arbitrary positions, but it incurs a quality loss relative to full-context prefill. Existing methods repair this loss by restoring global position IDs or recomputing selected tokens. In this work, we isolate the source of the loss, finding that the positional mismatch has minor effect, and independently cached artifacts retain faithful representations: reading a provided artifact stays largely accurate, and performance degrades only when the model must select among multiple artifacts. Moreover, replacing PIC's attention scores with full-prefill scores recovers performance with the cached KV unchanged, localizing the failure to the attention rather than KV recomputation. Motivated by this, we propose Attuner, a query-side adaptation method that learns to read a frozen artifact cache. Attuner inserts low-rank adapters into the query projections and is trained by distilling full-prefill distribution into the student. It trains fewer than 0.05\% of the model parameters and, at inference, requires neither cache recomputation nor a full-context reference. On Qwen3-4B and Qwen3-8B across seven benchmarks covering skills, documents, memory, and code, Attuner substantially outperforms prior PIC baselines in both in-domain and out-of-domain settings, matches full-context prefill quality while providing up to 3.73times speedup.

Standard sequence models encode position by token rank rather than physical coordinate, typically forcing practitioners to destructively resample continuous physical signals such as spectra observed across heterogeneous instruments. We identify this coordinate mismatch as a structural limitation in cross-instrument representation learning, and propose OmniSpectra, a wavelength-native foundation model for spectral representation learning: a continuous-coordinate masked autoencoder that discards the integer pixel indexing of sequence modeling. Mapping physical coordinates to a logarithmic basis turns the multiplicative scaling induced by cosmological redshift into a uniform additive shift. In continuous rotary position embeddings, this shared shift cancels from relative token distances rather than producing grid-dependent positional distortion. We further counter the spectral bias inherent to implicit neural decoders with a physics-grounded, resolution-gated Fourier decoder that provides anti-aliasing. Pretrained on eight surveys and benchmarked against seven baselines, our model reaches state-of-the-art performance with only 12.2M parameters while outperforming substantially larger models, indicating that encoding physical structure can substitute for parameter scale.

Auto-regressive Large Language Models (LLMs) demonstrate remarkable performance across different domains such as vision and language processing. However, due to sequential processing through a stack of transformer layers, autoregressive decoding faces significant computation/latency challenges, particularly in resource-constrained environments like mobile and edge devices. Existing approaches in literature that aim to improve latency via skipping layers have two distinct flavors - 1) Early exit, and 2) Input-agnostic heuristics where tokens exit at pre-determined layers irrespective of input sequence. Both the above strategies have limitations - the former cannot be applied to handle KV Caching necessary for speed-ups in modern framework and the latter does not capture the variation in layer importance across tasks or more generally, across input sequences. To address both limitations, we propose FiRST, an algorithm that reduces inference latency by using layer-specific routers to select a subset of transformer layers adaptively for each input sequence - the prompt (during the prefill stage) decides which layers will be skipped during decoding. FiRST preserves compatibility with KV caching enabling faster inference while being quality-aware. FiRST is model-agnostic and can be easily enabled on any pre-trained LLM. Our approach reveals that input adaptivity is critical - indeed, different task-specific middle layers play a crucial role in evolving hidden representations depending on tasks. Extensive experiments show that FiRST significantly reduces latency while outperforming other layer selection strategies in quality metics. It retains competitive performance to base model (without layer skipping) and in some cases, even improves upon it. FiRST is thus a promising and efficient solution for LLM deployment in low-resource environments.

We study the hop-constrained s-t path enumeration (HcPE) problem, which takes a graph G, two distinct vertices s,t and a hop constraint k as input, and outputs all paths from s to t whose length is at most k. The state-of-the-art algorithms suffer from severe performance issues caused by the costly pruning operations during enumeration for the workloads with the large search space. Consequently, these algorithms hardly meet the real-time constraints of many online applications. In this paper, we propose PathEnum, an efficient index-based algorithm towards real-time HcPE. For an input query, PathEnum first builds a light-weight index aiming to reduce the number of edges involved in the enumeration, and develops efficient index-based approaches for enumeration, one based on depth-first search and the other based on joins. We further develop a query optimizer based on a join-based cost model to optimize the search order. We conduct experiments with 15 real-world graphs. Our experiment results show that PathEnum outperforms the state-of-the-art approaches by orders of magnitude in terms of the query time, throughput and response time.

Recent works on learned index open a new direction for the indexing field. The key insight of the learned index is to approximate the mapping between keys and positions with piece-wise linear functions. Such methods require partitioning key space for a better approximation. Although lots of heuristics are proposed to improve the approximation quality, the bottleneck is that the segmentation overheads could hinder the overall performance. This paper tackles the approximation problem by applying a distribution transformation to the keys before constructing the learned index. A two-stage Normalizing-Flow-based Learned index framework (NFL) is proposed, which first transforms the original complex key distribution into a near-uniform distribution, then builds a learned index leveraging the transformed keys. For effective distribution transformation, we propose a Numerical Normalizing Flow (Numerical NF). Based on the characteristics of the transformed keys, we propose a robust After-Flow Learned Index (AFLI). To validate the performance, comprehensive evaluations are conducted on both synthetic and real-world workloads, which shows that the proposed NFL produces the highest throughput and the lowest tail latency compared to the state-of-the-art learned indexes.

Tasks that require character-level reasoning, such as counting or locating characters within words, remain challenging for contemporary language models. A common conjecture is that language models' reliance on subword units, rather than characters, contributes to their struggles with character-level tasks, yet recent studies offer conflicting conclusions about the role of tokenization, leaving its impact unclear. To address this gap, we introduce CharBench, a comprehensive benchmark of character-level tasks that is two orders of magnitude larger than existing alternatives. We evaluate a diverse range of leading open-weight and proprietary models on CharBench and find that it presents a significant challenge to modern LLMs, with an average accuracy of 43.6% and 32.3% on some tasks. We present an in-depth analysis of how intrinsic properties of words and their segmentations into tokens correspond to model performance. For counting tasks, we find that tokenization properties are weakly correlated with correctness, while the length of the queried word and the actual character count play a more significant part. In contrast, for tasks requiring intra-word positional understanding, performance is negatively correlated with the length of the token containing the queried character, suggesting that longer tokens obscure character position information for LLMs. We encourage future work to build on the benchmark and evaluation methodology introduced here as tools for improving model performance on such tasks.

This study investigates the existence of positional biases in Transformer-based models for text representation learning, particularly in the context of web document retrieval. We build on previous research that demonstrated loss of information in the middle of input sequences for causal language models, extending it to the domain of representation learning. We examine positional biases at various stages of training for an encoder-decoder model, including language model pre-training, contrastive pre-training, and contrastive fine-tuning. Experiments with the MS-MARCO document collection reveal that after contrastive pre-training the model already generates embeddings that better capture early contents of the input, with fine-tuning further aggravating this effect.

We identify intrinsic limitations of Rotary Positional Embeddings (RoPE) in Transformer-based long-context language models. Our theoretical analysis abstracts away from the specific content of the context and depends only on its length. We prove that as context length increases, RoPE-based attention becomes unpredictable and loses two properties that are central to its effectiveness. First, it loses its locality bias: RoPE is no more likely to favor nearer positions than substantially farther ones. Second, it loses consistency in token relevance: a key vector that receives a higher attention score than an alternative at one position may receive a lower score at another. In both cases, the probability of failure approaches 0.5, no better than random guessing. We further prove that the attention score can remain unchanged when a key token is moved to a different position, or even replaced by a different token, indicating a failure to distinguish positions or tokens. Adjusting the RoPE base trades off distinguishing positions against distinguishing tokens but cannot preserve both at the same time. Increasing the RoPE base hyperparameter, a common practice in today's long-context models, helps distinguish different tokens, but inevitably sacrifices the ability to distinguish positions. Our empirical analysis shows that multi-head, multi-layer architectures are insufficient to overcome these limitations. Our findings suggest that fundamentally new mechanisms for encoding position and token order may be needed in future Transformer long-context language models.

While explicit positional encodings such as RoPE are a primary source of positional information in Transformer decoders, the causal mask also provides positional information. In this work, we prove that the causal mask can induce position-dependent patterns in attention scores, even without parameters or causal dependency in the input. Our theoretical analysis indicates that the induced attention pattern tends to favor nearby query-key pairs, mirroring the behavior of common positional encodings. Empirical analysis confirms that trained models exhibit the same behavior, with learned parameters further amplifying these patterns. Notably, we found that the interaction of causal mask and RoPE distorts RoPE's relative attention score patterns into non-relative ones. We consistently observed this effect in modern large language models, suggesting the importance of considering the causal mask as a source of positional information alongside explicit positional encodings.

With the incorporation of the UNet architecture, diffusion probabilistic models have become a dominant force in image generation tasks. One key design in UNet is the skip connections between the encoder and decoder blocks. Although skip connections have been shown to improve training stability and model performance, we reveal that such shortcuts can be a limiting factor for the complexity of the transformation. As the sampling steps decrease, the generation process and the role of the UNet get closer to the push-forward transformations from Gaussian distribution to the target, posing a challenge for the network's complexity. To address this challenge, we propose Skip-Tuning, a simple yet surprisingly effective training-free tuning method on the skip connections. Our method can achieve 100% FID improvement for pretrained EDM on ImageNet 64 with only 19 NFEs (1.75), breaking the limit of ODE samplers regardless of sampling steps. Surprisingly, the improvement persists when we increase the number of sampling steps and can even surpass the best result from EDM-2 (1.58) with only 39 NFEs (1.57). Comprehensive exploratory experiments are conducted to shed light on the surprising effectiveness. We observe that while Skip-Tuning increases the score-matching losses in the pixel space, the losses in the feature space are reduced, particularly at intermediate noise levels, which coincide with the most effective range accounting for image quality improvement.

Two different approaches exist to handle missing values for prediction: either imputation, prior to fitting any predictive algorithms, or dedicated methods able to natively incorporate missing values. While imputation is widely (and easily) use, it is unfortunately biased when low-capacity predictors (such as linear models) are applied afterward. However, in practice, naive imputation exhibits good predictive performance. In this paper, we study the impact of imputation in a high-dimensional linear model with MCAR missing data. We prove that zero imputation performs an implicit regularization closely related to the ridge method, often used in high-dimensional problems. Leveraging on this connection, we establish that the imputation bias is controlled by a ridge bias, which vanishes in high dimension. As a predictor, we argue in favor of the averaged SGD strategy, applied to zero-imputed data. We establish an upper bound on its generalization error, highlighting that imputation is benign in the d sqrt n regime. Experiments illustrate our findings.

To be discoverable in an embedding-based search process, each part of a document should be reflected in its embedding representation. To quantify any potential reflection biases, we introduce a permutation-based evaluation framework. With this, we observe that state-of-the-art embedding models exhibit systematic positional and language biases when documents are longer and consist of multiple segments. Specifically, early segments and segments in higher-resource languages like English are over-represented, while later segments and segments in lower-resource languages are marginalized. In our further analysis, we find that the positional bias stems from front-loaded attention distributions in pooling-token embeddings, where early tokens receive more attention. To mitigate this issue, we introduce an inference-time attention calibration method that redistributes attention more evenly across document positions, increasing discoverabiltiy of later segments. Our evaluation framework and attention calibration is available at https://github.com/impresso/fair-sentence-transformers

Approximate nearest neighbor search (ANNS) is a fundamental building block in information retrieval with graph-based indices being the current state-of-the-art and widely used in the industry. Recent advances in graph-based indices have made it possible to index and search billion-point datasets with high recall and millisecond-level latency on a single commodity machine with an SSD. However, existing graph algorithms for ANNS support only static indices that cannot reflect real-time changes to the corpus required by many key real-world scenarios (e.g. index of sentences in documents, email, or a news index). To overcome this drawback, the current industry practice for manifesting updates into such indices is to periodically re-build these indices, which can be prohibitively expensive. In this paper, we present the first graph-based ANNS index that reflects corpus updates into the index in real-time without compromising on search performance. Using update rules for this index, we design FreshDiskANN, a system that can index over a billion points on a workstation with an SSD and limited memory, and support thousands of concurrent real-time inserts, deletes and searches per second each, while retaining >95% 5-recall@5. This represents a 5-10x reduction in the cost of maintaining freshness in indices when compared to existing methods.

Length generalization, the ability to generalize from small training context sizes to larger ones, is a critical challenge in the development of Transformer-based language models. Positional encoding (PE) has been identified as a major factor influencing length generalization, but the exact impact of different PE schemes on extrapolation in downstream tasks remains unclear. In this paper, we conduct a systematic empirical study comparing the length generalization performance of decoder-only Transformers with five different position encoding approaches including Absolute Position Embedding (APE), T5's Relative PE, ALiBi, and Rotary, in addition to Transformers without positional encoding (NoPE). Our evaluation encompasses a battery of reasoning and mathematical tasks. Our findings reveal that the most commonly used positional encoding methods, such as ALiBi, Rotary, and APE, are not well suited for length generalization in downstream tasks. More importantly, NoPE outperforms other explicit positional encoding methods while requiring no additional computation. We theoretically demonstrate that NoPE can represent both absolute and relative PEs, but when trained with SGD, it mostly resembles T5's relative PE attention patterns. Finally, we find that scratchpad is not always helpful to solve length generalization and its format highly impacts the model's performance. Overall, our work suggests that explicit position embeddings are not essential for decoder-only Transformers to generalize well to longer sequences.

Large Language Models (LLMs) often struggle to process and generate coherent context when the number of input tokens exceeds the pre-trained length. Recent advancements in long-context extension have significantly expanded the context window of LLMs but require expensive overhead to train the large-scale models with longer context. In this work, we propose Dimension-Wise Positional Embeddings Manipulation (DPE), a training-free framework to extrapolate the context window of LLMs by diving into RoPE's different hidden dimensions. Instead of manipulating all dimensions equally, DPE detects the effective length for every dimension and finds the key dimensions for context extension. We reuse the original position indices with their embeddings from the pre-trained model and manipulate the key dimensions' position indices to their most effective lengths. In this way, DPE adjusts the pre-trained models with minimal modifications while ensuring that each dimension reaches its optimal state for extrapolation. DPE significantly surpasses well-known baselines such as YaRN and Self-Extend. DPE enables Llama3-8k 8B to support context windows of 128k tokens without continual training and integrates seamlessly with Flash Attention 2. In addition to its impressive extrapolation capability, DPE also dramatically improves the models' performance within training length, such as Llama3.1 70B, by over 18 points on popular long-context benchmarks RULER. When compared with commercial models, Llama 3.1 70B with DPE even achieves better performance than GPT-4-128K.

Data and pipeline parallelism are ubiquitous for training of Large Language Models (LLM) on distributed nodes. Driven by the need for cost-effective training, recent work explores efficient communication arrangement for end to end training. Motivated by LLM's resistance to layer skipping and layer reordering, in this paper, we explore stage (several consecutive layers) skipping in pipeline training, and challenge the conventional practice of sequential pipeline execution. We derive convergence and throughput constraints (guidelines) for pipelining with skipping and swapping pipeline stages. Based on these constraints, we propose SkipPipe, the first partial pipeline framework to reduce the end-to-end training time for LLMs while preserving the convergence. The core of SkipPipe is a path scheduling algorithm that optimizes the paths for individual microbatches and reduces idle time (due to microbatch collisions) on the distributed nodes, complying with the given stage skipping ratio. We extensively evaluate SkipPipe on LLaMa models from 500M to 8B parameters on up to 20 nodes. Our results show that SkipPipe reduces training iteration time by up to 55% compared to full pipeline. Our partial pipeline training also improves resistance to layer omission during inference, experiencing a drop in perplexity of only 7% when running only half the model. Our code is available at https://github.com/gensyn-ai/skippipe.

Autoregressive large language models (LLMs) have made remarkable progress in various natural language generation tasks. However, they incur high computation cost and latency resulting from the autoregressive token-by-token generation. To address this issue, several approaches have been proposed to reduce computational cost using early-exit strategies. These strategies enable faster text generation using reduced computation without applying the full computation graph to each token. While existing token-level early exit methods show promising results for online inference, they cannot be readily applied for batch inferencing and Key-Value caching. This is because they have to wait until the last token in a batch exits before they can stop computing. This severely limits the practical application of such techniques. In this paper, we propose a simple and effective token-level early exit method, SkipDecode, designed to work seamlessly with batch inferencing and KV caching. It overcomes prior constraints by setting up a singular exit point for every token in a batch at each sequence position. It also guarantees a monotonic decrease in exit points, thereby eliminating the need to recompute KV Caches for preceding tokens. Rather than terminating computation prematurely as in prior works, our approach bypasses lower to middle layers, devoting most of the computational resources to upper layers, allowing later tokens to benefit from the compute expenditure by earlier tokens. Our experimental results show that SkipDecode can obtain 2x to 5x inference speedups with negligible regression across a variety of tasks. This is achieved using OPT models of 1.3 billion and 6.7 billion parameters, all the while being directly compatible with batching and KV caching optimization techniques.

Transformers with causal attention can solve tasks that require positional information without using positional encodings. In this work, we propose and investigate a new hypothesis about how positional information can be stored without using explicit positional encoding. We observe that nearby embeddings are more similar to each other than faraway embeddings, allowing the transformer to potentially reconstruct the positions of tokens. We show that this pattern can occur in both the trained and the randomly initialized Transformer models with causal attention and no positional encodings over a common range of hyperparameters.

We present Position Interpolation (PI) that extends the context window sizes of RoPE-based pretrained LLMs such as LLaMA models to up to 32768 with minimal fine-tuning (within 1000 steps), while demonstrating strong empirical results on various tasks that require long context, including passkey retrieval, language modeling, and long document summarization from LLaMA 7B to 65B. Meanwhile, the extended model by Position Interpolation preserve quality relatively well on tasks within its original context window. To achieve this goal, Position Interpolation linearly down-scales the input position indices to match the original context window size, rather than extrapolating beyond the trained context length which may lead to catastrophically high attention scores that completely ruin the self-attention mechanism. Our theoretical study shows that the upper bound of interpolation is at least sim 600 times smaller than that of extrapolation, further demonstrating its stability. Models extended via Position Interpolation retain its original architecture and can reuse most pre-existing optimization and infrastructure.

Many language-model pipelines end in a closed-set decision, such as selecting a tool. Prompting a large language model for it is slow and order-sensitive. We ask how small an encoder for such decisions can be and whether it should read the options jointly or separately. In a three-seed study at 32 million parameters, per-option scoring beats joint scoring on a held-out sample of a 37-benchmark decision suite by 5.8 points of chance-corrected skill at matched optimizer steps and by 2.8 at approximately matched training compute; two external benchmarks agree, though not significantly on their unseen tasks. Crossing reader with initialisation shows that the advantage requires a reranker initialisation, whose query-candidate pair input matches per-option reading; from the raw encoder the two readers are indistinguishable. Per-option scoring needs 5 to 13 times more encoder passes: at most twice the median latency, but more than four times the mean. Of six released joint encoders (17 million to 1 billion parameters), the 68- and 150-million-parameter models exceed a 435-million-parameter DeBERTa-v3 zero-shot classifier by 4.9 and 5.9 accuracy points on 209 overlap-audited System1-Arena tasks and are at least on par with it on the 145 tasks unseen in training. The smallest answers a median request in 14 milliseconds on 16 processor threads, against 728 for the classifier. Reordering options changes 12 to 23% of the joint models' answers (per-option scoring: none). Up to 68 million parameters, they lead their size range on a public leaderboard's private, mainly in-distribution tests.

Rotary Position Embeddings (RoPE) have become a standard for encoding sequence order in Large Language Models (LLMs) by applying rotations to query and key vectors in the complex plane. Standard implementations, however, utilize only the real component of the complex-valued dot product for attention score calculation. This simplification discards the imaginary component, which contains valuable phase information, leading to a potential loss of relational details crucial for modeling long-context dependencies. In this paper, we propose an extension that re-incorporates this discarded imaginary component. Our method leverages the full complex-valued representation to create a dual-component attention score. We theoretically and empirically demonstrate that this approach enhances the modeling of long-context dependencies by preserving more positional information. Furthermore, evaluations on a suite of long-context language modeling benchmarks show that our method consistently improves performance over the standard RoPE, with the benefits becoming more significant as context length increases. The code is available at https://github.com/OpenMOSS/rope_pp.

Text-based person retrieval under a sim-to-real gap (synthetic training data, a real-image gallery) is usually tackled with costly fine-tuned cross-encoders. We ask whether a frozen-encoder system can compete. We present SCOUT, which casts cross-modal retrieval as prediction in embedding space. A trainable predictor maps the patch tokens of a frozen video encoder into the embedding space of a frozen text encoder under a bidirectional InfoNCE objective, and no encoder is fine-tuned in the base model. The video encoder is V-JEPA, the text encoder is EmbeddingGemma, and the predictor is initialized from a Qwen3.5-0.8B decoder. We make three findings. First, the best frozen text encoder is simply the one whose geometry best matches the video features. A training-free alignment score ranks three candidate text encoders in the same order as their retrieval accuracy on our held-out split (Spearman ρ= 1.0); a fourth, LLM-based encoder shows the rule is metric-dependent, holding for a neighborhood-overlap score (ρ= 0.8) but not for a linear probe (ρ= -0.2). Second, two precision-targeted levers, parameter-efficient ExPLoRA adaptation of the video encoder and a training-free attribute-decomposed reranker built on a vision-language model, improve the top-rank precision that otherwise limits the frozen system, adding 2.2 points of leaderboard R@1. Third, a local-versus-public calibration study explains which interventions transfer to the real domain. On AI City Challenge 2026 Track 4 the full retrieve-fuse-rerank system reaches 84.25 mAP@10 on the final leaderboard, while a single frozen model submitted alone reaches 60.63. Our trained components cost about 95 GPU-hours. CMP, the dataset authors' fine-tuned cross-encoder that trains for sixteen GPU-days, is one fusion member of the full system, not an alternative. Code and annotations: https://github.com/abtraore/SCOUT-ECCV

Pre-trained language model (PTM) has been shown to yield powerful text representations for dense passage retrieval task. The Masked Language Modeling (MLM) is a major sub-task of the pre-training process. However, we found that the conventional random masking strategy tend to select a large number of tokens that have limited effect on the passage retrieval task (e,g. stop-words and punctuation). By noticing the term importance weight can provide valuable information for passage retrieval, we hereby propose alternative retrieval oriented masking (dubbed as ROM) strategy where more important tokens will have a higher probability of being masked out, to capture this straightforward yet essential information to facilitate the language model pre-training process. Notably, the proposed new token masking method will not change the architecture and learning objective of original PTM. Our experiments verify that the proposed ROM enables term importance information to help language model pre-training thus achieving better performance on multiple passage retrieval benchmarks.

Learned sparse retrieval systems aim to combine the effectiveness of contextualized language models with the scalability of conventional data structures such as inverted indexes. Nevertheless, the indexes generated by these systems exhibit significant deviations from the ones that use traditional retrieval models, leading to a discrepancy in the performance of existing query optimizations that were specifically developed for traditional structures. These disparities arise from structural variations in query and document statistics, including sub-word tokenization, leading to longer queries, smaller vocabularies, and different score distributions within posting lists. This paper introduces Block-Max Pruning (BMP), an innovative dynamic pruning strategy tailored for indexes arising in learned sparse retrieval environments. BMP employs a block filtering mechanism to divide the document space into small, consecutive document ranges, which are then aggregated and sorted on the fly, and fully processed only as necessary, guided by a defined safe early termination criterion or based on approximate retrieval requirements. Through rigorous experimentation, we show that BMP substantially outperforms existing dynamic pruning strategies, offering unparalleled efficiency in safe retrieval contexts and improved tradeoffs between precision and efficiency in approximate retrieval tasks.

Aligned instruction following models can better fulfill user requests than their unaligned counterparts. However, it has been shown that there is a length bias in evaluation of such models, and that training algorithms tend to exploit this bias by learning longer responses. In this work we show how to train models that can be controlled at inference time with instructions containing desired length constraints. Such models are superior in length instructed evaluations, outperforming standard instruction following models such as GPT4, Llama 3 and Mixtral.

Generalizing to longer sentences is important for recent Transformer-based language models. Besides algorithms manipulating explicit position features, the success of Transformers without position encodings (NoPE) provides a new way to overcome the challenge. In this paper, we study the length generalization property of NoPE. We find that although NoPE can extend to longer sequences than the commonly used explicit position encodings, it still has a limited context length. We identify a connection between the failure of NoPE's generalization and the distraction of attention distributions. We propose a parameter-efficient tuning for searching attention heads' best temperature hyper-parameters, which substantially expands NoPE's context size. Experiments on long sequence language modeling, the synthetic passkey retrieval task and real-world long context tasks show that NoPE can achieve competitive performances with state-of-the-art length generalization algorithms. The source code is publicly accessible

The performance of Large Language Models (LLMs) is significantly sensitive to the contextual position of information in the input. To investigate the mechanism behind this positional bias, our extensive experiments reveal a consistent phenomenon we term the attention basin: when presented with a sequence of structured items (e.g., retrieved documents or few-shot examples), models systematically assign higher attention to the items at the beginning and end of the sequence, while neglecting those in the middle. Crucially, our analysis further reveals that allocating higher attention to critical information is key to enhancing model performance. Based on these insights, we introduce Attention-Driven Reranking (AttnRank), a two-stage framework that (i) estimates a model's intrinsic positional attention preferences using a small calibration set, and (ii) reorders retrieved documents or few-shot examples to align the most salient content with these high-attention positions. AttnRank is a model-agnostic, training-free, and plug-and-play method with minimal computational overhead. Experiments on multi-hop QA and few-shot in-context learning tasks demonstrate that AttnRank achieves substantial improvements across 10 large language models of varying architectures and scales, without modifying model parameters or training procedures.

We present **vstash**, a local-first document memory system that combines vector similarity search with full-text keyword matching via Reciprocal Rank Fusion (RRF) and adaptive per-query IDF weighting. All data resides in a single SQLite file using sqlite-vec for approximate nearest neighbor search and FTS5 for keyword matching. We make four primary contributions. **(1)** Self-supervised embedding refinement via hybrid retrieval disagreement: across 753 BEIR queries on SciFact, NFCorpus, and FiQA, 74.5% produce top-10 disagreement between vector-heavy (vec=0.95, fts=0.05) and FTS-heavy (vec=0.05, fts=0.95) search (per-dataset rates 63.4% / 73.4% / 86.7%, Section 5.2), providing a free training signal without human labels. Fine-tuning BGE-small (33M params) with MultipleNegativesRankingLoss on 76K disagreement triples improves NDCG@10 on all 5 BEIR datasets (up to +19.5% on NFCorpus vs. BGE-small base RRF, Table 6). On 3 of 5 datasets, under different preprocessing, the tuned 33M-parameter pipeline matches or exceeds published ColBERTv2 results (110M params) and an untrained BGE-base (110M); on FiQA and ArguAna it underperforms ColBERTv2 (Section 5.5). **(2)** Adaptive RRF with per-query IDF weighting improves NDCG@10 on all 5 BEIR datasets versus fixed weights (up to +21.4% on ArguAna), achieving 0.7263 on SciFact with BGE-small. **(3)** A negative result on post-RRF scoring: frequency+decay, history-augmented recall, and cross-encoder reranking all failed to improve NDCG. **(4)** A production-grade substrate with integrity checking, schema versioning, ranking diagnostics, and a distance-based relevance signal validated on 50,425 relevance-judged queries across the 5 BEIR datasets. Search latency remains 20.9 ms median at 50K chunks with stable NDCG. The fine-tuned model is published as `Stffens/bge-small-rrf-v2` on HuggingFace. All code, data, and experiments are open-source.

We present AutoIndex, a framework for learning representation programs: executable transformations that map raw documents into the representations exposed to a retrieval system. Rather than tuning retrievers, rerankers, or a small set of preprocessing hyperparameters, AutoIndex searches over programs that slice, enrich, normalize, reweight, or reorganize documents before indexing. At each iteration, AutoIndex performs validation-guided program search, in which agents diagnose failures of the current program and synthesize candidate updates, retaining only updates that improve retrieval quality under the resulting index. We evaluate AutoIndex on CRUMB, a benchmark of heterogeneous retrieval tasks, with BM25 held fixed across all experiments. The learned programs improve recall over a static full-document BM25 baseline on all 8 tasks, with average gains of +8.4% in Recall@100 and +8.3% in nDCG@10, and largest gains of +30.5% in Recall@100 and +43.6% in nDCG@10. These results suggest that document representation should not be treated as a fixed preprocessing choice made before retrieval begins, but as an explicit optimization target. Code to reproduce our results is available at https://github.com/auto-index/autoindex.

Positional encoding mechanisms enable Transformers to model sequential structure and long-range dependencies in text. While absolute positional encodings struggle with extrapolation to longer sequences due to fixed positional representations, and relative approaches like Alibi exhibit performance degradation on extremely long contexts, the widely-used Rotary Positional Encoding (RoPE) introduces oscillatory attention patterns that hinder stable long-distance dependency modelling. We address these limitations through a geometric reformulation of positional encoding. Drawing inspiration from Lorentz transformations in hyperbolic geometry, we propose Hyperbolic Rotary Positional Encoding (HoPE), which leverages hyperbolic functions to implement Lorentz rotations on token representations. Theoretical analysis demonstrates that RoPE is a special case of our generalized formulation. HoPE fundamentally resolves RoPE's slation issues by enforcing monotonic decay of attention weights with increasing token distances. Extensive experimental results, including perplexity evaluations under several extended sequence benchmarks, show that HoPE consistently exceeds existing positional encoding methods. These findings underscore HoPE's enhanced capacity for representing and generalizing long-range dependencies. Data and code will be available.

Recent Vision-Language Models (e.g., ColPali) enable fine-grained Visual Document Retrieval (VDR) but incur prohibitive multi-vector index storage overhead. Existing training-free pruning methods either rely on heuristic layer choices or degrade sharply under aggressive compression, leading prior work to argue that effective high-compression pruning requires query-dependent training. We challenge this view with Structural Anchor Pruning (SAP), a self-calibrating, training-free, and query-agnostic index-time pruning framework with three components: (i) Score Retention (SR), a white-box per-layer compression diagnostic; (ii) SR-guided window selection, a procedure that automatically locates the structural pruning region for any backbone with no per-model hyperparameters; and (iii) a visual in-degree centrality scorer that identifies anchor patches within the selected window. On the ViDoRe v1/v2 benchmarks across three architectures spanning 18, 28, and 36 backbone layers, SAP retains over 90\% of NDCG@5 while pruning more than 90\% of visual tokens, without any per-model parameter tuning. Our layer-resolved SR analysis reveals an Alignment-Aggregation Divergence: the document's visual structure is preserved as a stable ``Structural Plateau'' within the backbone, but the final layers reshape this representation into a sparse, query-aligned form that is no longer suitable for pruning. This is the mechanistic reason SAP succeeds where final-layer methods fail.

Current language models often fail to incorporate long contexts efficiently during generation. We show that a major contributor to this issue are attention priors that are likely learned during pre-training: relevant information located earlier in context is attended to less on average. Yet even when models fail to use the information from a relevant document in their response, they still pay preferential attention to that document compared to an irrelevant document at the same position. We leverage this fact to introduce ``attention sorting'': perform one step of decoding, sort documents by the attention they receive (highest attention going last), repeat the process, generate the answer with the newly sorted context. We find that attention sorting improves performance of long context models. Our findings highlight some challenges in using off-the-shelf language models for retrieval augmented generation.

Recurrent models have been dominating the field of neural machine translation (NMT) for the past few years. Transformers vaswani2017attention, have radically changed it by proposing a novel architecture that relies on a feed-forward backbone and self-attention mechanism. Although Transformers are powerful, they could fail to properly encode sequential/positional information due to their non-recurrent nature. To solve this problem, position embeddings are defined exclusively for each time step to enrich word information. However, such embeddings are fixed after training regardless of the task and the word ordering system of the source or target language. In this paper, we propose a novel architecture with new position embeddings depending on the input text to address this shortcoming by taking the order of target words into consideration. Instead of using predefined position embeddings, our solution generates new embeddings to refine each word's position information. Since we do not dictate the position of source tokens and learn them in an end-to-end fashion, we refer to our method as dynamic position encoding (DPE). We evaluated the impact of our model on multiple datasets to translate from English into German, French, and Italian and observed meaningful improvements in comparison to the original Transformer.

Large Language Models (LLMs) demonstrate impressive capabilities across various domains, including role-playing, creative writing, mathematical reasoning, and coding. Despite these advancements, LLMs still encounter challenges with length control, frequently failing to adhere to specific length constraints due to their token-level operations and insufficient training on data with strict length limitations. We identify this issue as stemming from a lack of positional awareness and propose novel approaches--PositionID Prompting and PositionID Fine-Tuning--to address it. These methods enhance the model's ability to continuously monitor and manage text length during generation. Additionally, we introduce PositionID CP Prompting to enable LLMs to perform copy and paste operations accurately. Furthermore, we develop two benchmarks for evaluating length control and copy-paste abilities. Our experiments demonstrate that our methods significantly improve the model's adherence to length constraints and copy-paste accuracy without compromising response quality.

Advancements in distributed training and efficient attention mechanisms have significantly expanded the context window sizes of large language models (LLMs). However, recent work reveals that the effective context lengths of open-source LLMs often fall short, typically not exceeding half of their training lengths. In this work, we attribute this limitation to the left-skewed frequency distribution of relative positions formed in LLMs pretraining and post-training stages, which impedes their ability to effectively gather distant information. To address this challenge, we introduce ShifTed Rotray position embeddING (STRING). STRING shifts well-trained positions to overwrite the original ineffective positions during inference, enhancing performance within their existing training lengths. Experimental results show that without additional training, STRING dramatically improves the performance of the latest large-scale models, such as Llama3.1 70B and Qwen2 72B, by over 10 points on popular long-context benchmarks RULER and InfiniteBench, establishing new state-of-the-art results for open-source LLMs. Compared to commercial models, Llama 3.1 70B with \method even achieves better performance than GPT-4-128K and clearly surpasses Claude 2 and Kimi-chat.

Recently, dynamic computation methods have shown notable acceleration for Large Language Models (LLMs) by skipping several layers of computations through elaborate heuristics or additional predictors. However, in the decoding process of existing approaches, different samples are assigned different computational budgets, which cannot guarantee a stable and precise acceleration effect. Furthermore, existing approaches generally skip multiple contiguous layers at the bottom or top of the layers, leading to a drastic change in the model's layer-wise representations, and thus a consequent performance degeneration. Therefore, we propose a Unified Layer Skipping strategy, which selects the number of layers to skip computation based solely on the target speedup ratio, and then skips the corresponding number of intermediate layer computations in a balanced manner. Since the Unified Layer Skipping strategy is independent of input samples, it naturally supports popular acceleration techniques such as batch decoding and KV caching, thus demonstrating more practicality for real-world applications. Experimental results on two common tasks, i.e., machine translation and text summarization, indicate that given a target speedup ratio, the Unified Layer Skipping strategy significantly enhances both the inference performance and the actual model throughput over existing dynamic approaches.

Large Language Models (LLMs), such as the GPT-4 and LLaMA families, have demonstrated considerable success across diverse tasks, including multiple-choice questions (MCQs). However, these models exhibit a positional bias, particularly an even worse anchored bias in the GPT-2 family, where they consistently favour the first choice 'A' in MCQs during inference. This anchored bias challenges the integrity of GPT-2's decision-making process, as it skews performance based on the position rather than the content of the choices in MCQs. In this study, we utilise the mechanistic interpretability approach to identify the internal modules within GPT-2 models responsible for this bias. We focus on the Multi-Layer Perceptron (MLP) layers and attention heads, using the "logit lens" method to trace and modify the specific value vectors that contribute to the bias. By updating these vectors within MLP and recalibrating attention patterns to neutralise the preference for the first choice 'A', we effectively mitigate the anchored bias. Our interventions not only mitigate the bias but also improve the overall MCQ prediction accuracy for the GPT-2 family across various datasets. This work represents the first comprehensive mechanistic analysis of anchored bias in MCQs within the GPT-2 models, introducing targeted, minimal-intervention strategies that significantly enhance GPT2 model robustness and accuracy in MCQs. Our code is available at https://github.com/ruizheliUOA/Anchored_Bias_GPT2.

Approximate nearest neighbor (ANN) graph indices such as HNSW and Vamana construct their edge topology in full-precision or high-fidelity quantized metric spaces, relegating binary quantization (BQ) to a post-hoc distance estimator during search. This paper asks a different question: Can binary quantization define the graph topology itself -- and if so, under what conditions? We study this question through QuIVer (Quantized Index for Vector Retrieval), a training-free ANN graph index that performs Vamana edge selection, diversity pruning, and beam-search navigation entirely within a 2-bit Sign-Magnitude BQ metric space, accessing float32 vectors only for final reranking. Systematic evaluation on twelve million-scale datasets reveals a sharp applicability boundary: BQ-native topology is highly effective on cosine-native contrastive-learning embeddings (>=88% Recall@10 at ef=64 across five datasets, 384--3072 dimensions), moderately effective on multimodal CLIP data (71--78%), and empirically unsuitable for Euclidean-native or structureless distributions (<15%). Our results suggest an empirical "impossible triangle" between aggressive compression, high throughput, and universal data compatibility. The central contribution is not merely the system, but the boundary it reveals: falsifiable criteria for when industrial vector search systems can safely trade metric fidelity for compact BQ-native navigation. On compatible workloads, the system benefits are substantial: QuIVer's BQ-native hot path (<1.3 GB for 1M vectors) yields 2.5--5.5x higher multi-threaded throughput than DiskANN Rust and HNSW variants at matched recall, with 4.7x less hot memory and no codebook or rotation training (unlike PQ/OPQ/RaBitQ).